PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169073.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 300aa MW: 33972.8 Da PI: 9.7341

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169073.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.2e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t Ed ll +++ +G g+W++ ++ g+ R++k+c++rw +yl XP_019169073.1 14 KGPWSTKEDSLLTTYIQHHGEGHWRSLPKNAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56.7	5.7e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eEd+l+v+++ + G++ W++Ia +++ gRt++++k++w+++l XP_019169073.1 67 RGNFTPEEDDLIVRLHSLIGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MGRAPCCSKD GLKKGPWSTK EDSLLTTYIQ HHGEGHWRSL PKNAGLLRCG KSCRLRWMNY 60 LRPGIKRGNF TPEEDDLIVR LHSLIGNRWS LIAGRLPGRT DNEIKNYWNT HLLKKLKSEG 120 FQPKPRRTSR AIPKNKKTAK PEKTGRDEKR TKRKSGSKPD AGNRHPDPPE MTTKVKVYAP 180 KPVRVSTGFA RNYSFDDLAG ASTSSSSGHN NNNNNNNNNN NNNNNNNNNN NNNNTVDGTS 240 FVPWNIYDYG DDLFKDLMDG CDLSANYSLS DLNDAMLEKV YDEYLELLSE DSYLQTCFPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	1e-65	MYB family protein