PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019168917.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 323aa    MW: 35880.1 Da    PI: 8.1831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019168917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00093242264123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+++Fs+   L  H r H
  XP_019168917.1 242 HTCSICSRVFSSGRALGGHKRFH 264
                     79*************99999987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MNANTNDTRN FILPPPPPPP AGSSASDATA TFQQRHMVGG LNCYPKKVRR KSSKVKHMDP  60
LGSGSTSTSS KQPKYRKKPP LTPPDQDAPK IARPCSECGK KFWSWKALFG HMRCHPERQW  120
RGINPPPNFR RPSPSPLSSS STWPPHHDDN DDECGPSGGY YYYYYSEKMV GGMTEEDHEV  180
AACLLLLANN AVPVDHQLKP QQEAVGLGFG ISCCSRNNGG RIREEDDDDE MINIHNHQRQ  240
SHTCSICSRV FSSGRALGGH KRFHCRDRGD HNTQPPPPCT NNYLDFNLNL VPTPTPAPDP  300
HHQDQDRSSF AAPLPTLDLS LGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-22C2H2 family protein