PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168759.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 284aa MW: 31020.8 Da PI: 9.0495

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168759.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	65.4	1.1e-20	8	53	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+teEd+ll+++v+q+G ++W++I++ ++ gR++k+c++rw + XP_019168759.1 8 KGPWSTEEDDLLKKLVEQHGARNWSLISKSIP-GRSGKSCRLRWCNQ 53 79****************************.*********985 PP
2	Myb_DNA-binding	55.4	1.4e-17	62	104	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde ++++++q G++ W+tIar+++ gRt++ +k++w++ XP_019168759.1 62 PFTPEEDEVIAKVHAQVGNK-WATIARMLN-GRTDNAIKNHWNST 104 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MADSDRVKGP WSTEEDDLLK KLVEQHGARN WSLISKSIPG RSGKSCRLRW CNQLSPEVEH 60 RPFTPEEDEV IAKVHAQVGN KWATIARMLN GRTDNAIKNH WNSTLKRKYS AVIGSNEGGE 120 PRPGRILKRA DSADVTVTAA PPGLRVSRDS SSDSDISYSS NDNGPAAVRS VRLALPLQAV 180 EPRLVSEKEN DPSTVLTLSL PAPGSNDGVS SLQRDQPSYR RGDSTEAAAP APVKSESTLT 240 LSPELLSLMQ DMIRKEVETY YSALVIKDGV RNAEVKRIGL GKTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	1e-62	MYB family protein