PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168717.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 548aa MW: 58803.4 Da PI: 8.2413

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.5	1.6e-29	308	366	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+++d v+++tYeg+H h+ XP_019168717.1 308 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCSDDRAVLKTTYEGTHSHP 366 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MEKGGWGLTL KSSESIEKPT VFGFTSTPSW LNPIKSGGGG GASMFPVNLN RKDDHSAAAP 60 SAASEKRAVA VNEVDFFPVK KLPAAEAPAV LVKKEMGFND EHNTRPDLNV NTGLELVIAN 120 NGENENQSTV DGSAAADVER RAKSEVARLQ GEVERMKDEN QKLKGMLSQA TDSYGALHMY 180 FLTLVHQQQQ QQNTSTTYQV ADGKGTDEPL SHNSRTSTGE RTESESPGNN NVEPAPSRSH 240 EGSVGRRRRE ESEDSETWRG NKVPRLNNPS KPVDVVDDDD QAAAGSAAVT MRKARVSVRA 300 RSEASMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCSD DRAVLKTTYE 360 GTHSHPLPPA AMAMASTTSA AASMLLSGAV PSGGDMMMNP NFMGRAIFPS GSIATISASA 420 PFPTITLDLT HQPLNSLPNY PRPQFPFSNT PQNPQHYVST PQVFGQAALY NNQSKFSGLQ 480 VSNIPQHPSF AHHGATTAAI AADPHFTAAL AAAISSIING SQHIITTNTH SNPSSNSNQL 540 TSSFLPAK

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MEKGGWGLTL KSSESIEKPT VFGFTSTPSW LNPIKSGGGG GASMFPVNLN RKDDHSAAAP  60
SAASEKRAVA VNEVDFFPVK KLPAAEAPAV LVKKEMGFND EHNTRPDLNV NTGLELVIAN  120
NGENENQSTV DGSAAADVER RAKSEVARLQ GEVERMKDEN QKLKGMLSQA TDSYGALHMY  180
FLTLVHQQQQ QQNTSTTYQV ADGKGTDEPL SHNSRTSTGE RTESESPGNN NVEPAPSRSH  240
EGSVGRRRRE ESEDSETWRG NKVPRLNNPS KPVDVVDDDD QAAAGSAAVT MRKARVSVRA  300
RSEASMISDG CQWRKYGQKM AKGNPCPRAY YRCTMAVGCP VRKQVQRCSD DRAVLKTTYE  360
GTHSHPLPPA AMAMASTTSA AASMLLSGAV PSGGDMMMNP NFMGRAIFPS GSIATISASA  420
PFPTITLDLT HQPLNSLPNY PRPQFPFSNT PQNPQHYVST PQVFGQAALY NNQSKFSGLQ  480
VSNIPQHPSF AHHGATTAAI AADPHFTAAL AAAISSIING SQHIITTNTH SNPSSNSNQL  540
TSSFLPAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	2e-85	WRKY family protein