PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168525.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 660aa MW: 76056.7 Da PI: 8.7798

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.2	5.8e-23	7	99	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA vGF+vr+s+ k++ r g+i+k++ vCs+eg++e++ k+ t+k++r+r+++r+gC a+l+++++k+gk++v++++ H+H l+ XP_019168525.1 7 FYMNYAGIVGFDVRRSSDKRN-RYGQIMKKQVVCSREGYKETKGKEtieegTTKQKRRRTTNRVGCPARLVLTLNKEGKYVVKTFVDRHTHVLC 99 9*************99998.7777*************999999999***********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 660 aa Download sequence
MEDGITFYMN YAGIVGFDVR RSSDKRNRYG QIMKKQVVCS REGYKETKGK ETIEEGTTKQ 60 KRRRTTNRVG CPARLVLTLN KEGKYVVKTF VDRHTHVLCE EKYKRFMNVN RKIDIGHQEF 120 ITNCENVNVG ASKSFDIYAE MVGGPENVGA TQQDFKNYRR ELLAYMKEKD IQMVISQYLE 180 KKNDCVDMYF EYDVNEKDQL ARVFWADRRA RMHYGAFGDV VSFDATYKTN RYNLVFVPFT 240 GIDNHKRCVT FAAGLIDKED VESYSWILRN FKNAMGSTPP IVITDQDPAM KVVIETEFPG 300 TRHRYCMWHI MTKVGDKVGN TLAKNEEFRR ALNAVVWNEE ATTIGFESAW HEVIQKYGLL 360 ENRWLKCMYD ERASWVPPFF EDVFMGGLLR TTSRSEAENR IFQSNTNKHL CLVEFFKRFE 420 SAVRKQRDKH LELSAACNGQ KPPLKTLLRI ERDAATVYTL TVFSDVQKEI CEGWSTCRVR 480 SYTEAEGVKT YVVEDGTNKR YTVIVEDGSN NTSCKCRLYT RIGLLCRHVF VVLKDERIDH 540 IPPQHITPRW TKEAVKHIEK GTGVGRQIGA NNNAHNTTVE GKVINTIYRC LGMARGNGEK 600 MQQITNVIEE LEATLCDKEV NRAEGNTKRA VMEAYCGVSE PDTIKVHPPQ SRRPKGLASE

Sequence ? help Back to Top

Protein Sequence Length: 660 aa Download sequence

MEDGITFYMN YAGIVGFDVR RSSDKRNRYG QIMKKQVVCS REGYKETKGK ETIEEGTTKQ  60
KRRRTTNRVG CPARLVLTLN KEGKYVVKTF VDRHTHVLCE EKYKRFMNVN RKIDIGHQEF  120
ITNCENVNVG ASKSFDIYAE MVGGPENVGA TQQDFKNYRR ELLAYMKEKD IQMVISQYLE  180
KKNDCVDMYF EYDVNEKDQL ARVFWADRRA RMHYGAFGDV VSFDATYKTN RYNLVFVPFT  240
GIDNHKRCVT FAAGLIDKED VESYSWILRN FKNAMGSTPP IVITDQDPAM KVVIETEFPG  300
TRHRYCMWHI MTKVGDKVGN TLAKNEEFRR ALNAVVWNEE ATTIGFESAW HEVIQKYGLL  360
ENRWLKCMYD ERASWVPPFF EDVFMGGLLR TTSRSEAENR IFQSNTNKHL CLVEFFKRFE  420
SAVRKQRDKH LELSAACNGQ KPPLKTLLRI ERDAATVYTL TVFSDVQKEI CEGWSTCRVR  480
SYTEAEGVKT YVVEDGTNKR YTVIVEDGSN NTSCKCRLYT RIGLLCRHVF VVLKDERIDH  540
IPPQHITPRW TKEAVKHIEK GTGVGRQIGA NNNAHNTTVE GKVINTIYRC LGMARGNGEK  600
MQQITNVIEE LEATLCDKEV NRAEGNTKRA VMEAYCGVSE PDTIKVHPPQ SRRPKGLASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-80	FAR1 family protein