PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019168490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C3H | ||||||||
Protein Properties | Length: 372aa MW: 40394.5 Da PI: 8.6259 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31 | 4.2e-10 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C ++ rtG C yG++C+F+H++ XP_019168490.1 49 PGVPDCAYYIRTGLCGYGGKCRFNHPR 75 5789*********************96 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 94 | 120 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtGtCk+ ++CkF+H++ XP_019168490.1 94 PGEPTCQYYLRTGTCKFSASCKFHHPR 120 57899********************96 PP | |||||||
3 | zf-CCCH | 30.5 | 6.2e-10 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+ +Ck++H++ XP_019168490.1 141 DEKECSYYLKTGQCKFALTCKYHHPQ 166 6789********************97 PP | |||||||
4 | zf-CCCH | 37.4 | 4.3e-12 | 296 | 322 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p XP_019168490.1 296 PGQPECQHYMKTGNCKFGSSCRYHHPP 322 5789*********************97 PP | |||||||
5 | zf-CCCH | 32.9 | 1.1e-10 | 345 | 368 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+f+++ G+Ck+G +CkF H++ XP_019168490.1 345 QPCSFYLQKGFCKFGLSCKFDHPM 368 69********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence |
MEMYGRSTIR NGSQPDTSAE WAPVGPETDL EESMQRLGLW GRERYPERPG VPDCAYYIRT 60 GLCGYGGKCR FNHPRDRCSV GAVQLGVGVY PERPGEPTCQ YYLRTGTCKF SASCKFHHPR 120 NAGGSLSNVS LNIYGYPLRP DEKECSYYLK TGQCKFALTC KYHHPQPAGV SGPAAARPFY 180 PTVQSLPGPS TEQYSGNSAN FRVTRPPLLP GSYLPSAYGP VLLHPGMVPV QNWSYSGPVS 240 PSLSPGAQPS NGLASVYGIS QMASSSTAFP GPYSPLLAST GPSSSAQNEK CFPERPGQPE 300 CQHYMKTGNC KFGSSCRYHH PPGWNSSNIN IASSPLGLPL RPGAQPCSFY LQKGFCKFGL 360 SCKFDHPMES TI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-158 | C3H family protein |