PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019168375.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family RAV
Protein Properties Length: 331aa    MW: 36997 Da    PI: 10.3463
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019168375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.6e-1355103155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s++kGV   + +grW A+I++      +kr++lg+f  ++eA +a++ a+++++g
  XP_019168375.1  55 SKFKGVVPQP-NGRWGAQIYEK-----HKRVWLGTFNEEDEAGRAYDVAAQRFRG 103
                     79****9888.8*********3.....5**********99*************98 PP
2B3103.79.9e-33171266193
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f+k+ tpsdv+k++rlv+pk++ae++   +  +++++ l led++g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v F+++  ++++l
  XP_019168375.1 171 FEKAVTPSDVGKLNRLVIPKQHAEKYlplSPTTTKGVVLNLEDQNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDVVSFRRSTGEDKRL 265
                     89*************************9966778999*************************************************875566655 PP

                     E CS
              B3  93 v 93 
                     +
  XP_019168375.1 266 Y 266
                     4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MDSNESSCSD STSLAPPSTS IISPASQSPE NLRRLGSGVS AITEVESPSR KLQSSKFKGV  60
VPQPNGRWGA QIYEKHKRVW LGTFNEEDEA GRAYDVAAQR FRGRDAVTNF KPLSETEDTA  120
ALSFLLSRSK AEIVDMLRKH TYADELSRRR SLEHCEAEKW KKMGGGGERL FEKAVTPSDV  180
GKLNRLVIPK QHAEKYLPLS PTTTKGVVLN LEDQNGKVWR FRYSYWNSSQ SYVLTKGWSR  240
FVKEKGLRAG DVVSFRRSTG EDKRLYIDRK SPRSGVHSPP PPVKTVRLFG VNICSNTVPP  300
VSSNGGRKRM GEPELLLPLE CSKKQRVIDA L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-123RAV family protein