PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019168021.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 466aa MW: 53175.1 Da PI: 9.1715

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019168021.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.2	8.3e-16	44	136	9	90
FAR1 9 evGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + GF++r s+ + r+g+ ++++ vC++eg++++ ++ ++ +r+r+++rtgC+a+++ k + ++vt++ ++HnH+++ XP_019168021.1 44 HFGFDTRSSSVVTA-RDGTKIQKQIVCNREGFKNTGAQHchsqssvdagegPSRPKRRRVSNRTGCRARIMFKYIGAAGYQVTTFIEKHNHNMS 136 68***9998887.88889***********999999****99899999********************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MNSGERTFPI DIQSTNNPSL SPSSSSNGHT LTISPGMTQY WTPHFGFDTR SSSVVTARDG 60 TKIQKQIVCN REGFKNTGAQ HCHSQSSVDA GEGPSRPKRR RVSNRTGCRA RIMFKYIGAA 120 GYQVTTFIEK HNHNMSSVLA RQFLKGNRNI SSAHQKFILD CAKANIGASK SHGLYSHIVG 180 DYSEVGATVV DFKNVRRDLR AYILGADAQI LVHNLIKKQE MCPAFAFDYE VDEDEQMSRL 240 FWADPMSKKN FAAFGDVVSF DATYSTNRYD LAMGMEPRII VTDQDPAMKV AIPTVFKQDR 300 HRYCMWHIMC KVGEKVGPML NKDEEFRNKL NSIVWTSSLE PPNFEKQWRE LMEKYNLVEH 360 NWFKTMFEAR KHWIPAYFRD GFMGGLLRTT SRSESENYTY SRFTGPQSSL VEFMMNFDTA 420 LKSQRNTNAK LNSDNEGYNP DMKTPLGIEK HASIVYTITV FYQVQE

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MNSGERTFPI DIQSTNNPSL SPSSSSNGHT LTISPGMTQY WTPHFGFDTR SSSVVTARDG  60
TKIQKQIVCN REGFKNTGAQ HCHSQSSVDA GEGPSRPKRR RVSNRTGCRA RIMFKYIGAA  120
GYQVTTFIEK HNHNMSSVLA RQFLKGNRNI SSAHQKFILD CAKANIGASK SHGLYSHIVG  180
DYSEVGATVV DFKNVRRDLR AYILGADAQI LVHNLIKKQE MCPAFAFDYE VDEDEQMSRL  240
FWADPMSKKN FAAFGDVVSF DATYSTNRYD LAMGMEPRII VTDQDPAMKV AIPTVFKQDR  300
HRYCMWHIMC KVGEKVGPML NKDEEFRNKL NSIVWTSSLE PPNFEKQWRE LMEKYNLVEH  360
NWFKTMFEAR KHWIPAYFRD GFMGGLLRTT SRSESENYTY SRFTGPQSSL VEFMMNFDTA  420
LKSQRNTNAK LNSDNEGYNP DMKTPLGIEK HASIVYTITV FYQVQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	102	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-62	FAR1 family protein