PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167890.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 461aa MW: 53035.2 Da PI: 8.8263

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.8	1.7e-13	90	177	1	79
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY +YA+ +GF+vr ++++ r+ge+++r +vC++eg + +k ++k+rr++ ++r++C+a + +k ++g++e+t XP_019167890.1 90 DFYTNYARVCGFDVRLYTMQRA-RDGETVMRYLVCNREGIKGGGISKpicahgdsggKRKQRRRQISNRVKCRAWICFRKVSSGEFEIT 177 6***************9998.88999**********999999****99999********************999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MDGTGLINSD LYRYLQSRPH VTGNEFRAII SNSVRLQHYS AHASEADSDY VSHGVRELLA 60 EQTTNWCPAV DSEITPVVGR RFSTLDEGID FYTNYARVCG FDVRLYTMQR ARDGETVMRY 120 LVCNREGIKG GGISKPICAH GDSGGKRKQR RRQISNRVKC RAWICFRKVS SGEFEITVRL 180 QQNCVRANVG SSKGFKLYRE VTGSYANVGA TDIEFHNFKR DLQVYVDGKD GEMIIEKFKT 240 KRAMCENFFF DYDLDEENRV ARLFWANPIG RRNFSLFGDT VSFDATYGTN RYNLVFVPFT 300 GVDHHKQCIT FAAGLLTKED VESYTWLLQG FKTAMSSVPS CVITDQDPAM KIAIAQALPD 360 CRHRFCMWHI MTKVNEKIGS DLVKDVQFRN RLNGIVWNET ISVGEFEVQW HSLMEKYNLT 420 THRWFTKLYT EREFWIPAKK GRKCGVCGEY ARHNARSCPY K

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MDGTGLINSD LYRYLQSRPH VTGNEFRAII SNSVRLQHYS AHASEADSDY VSHGVRELLA  60
EQTTNWCPAV DSEITPVVGR RFSTLDEGID FYTNYARVCG FDVRLYTMQR ARDGETVMRY  120
LVCNREGIKG GGISKPICAH GDSGGKRKQR RRQISNRVKC RAWICFRKVS SGEFEITVRL  180
QQNCVRANVG SSKGFKLYRE VTGSYANVGA TDIEFHNFKR DLQVYVDGKD GEMIIEKFKT  240
KRAMCENFFF DYDLDEENRV ARLFWANPIG RRNFSLFGDT VSFDATYGTN RYNLVFVPFT  300
GVDHHKQCIT FAAGLLTKED VESYTWLLQG FKTAMSSVPS CVITDQDPAM KIAIAQALPD  360
CRHRFCMWHI MTKVNEKIGS DLVKDVQFRN RLNGIVWNET ISVGEFEVQW HSLMEKYNLT  420
THRWFTKLYT EREFWIPAKK GRKCGVCGEY ARHNARSCPY K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-56	FAR1 family protein