PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167874.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 409aa MW: 45930.2 Da PI: 7.548

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167874.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.6	1.5e-11	56	101	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 +fYn+YA+ +GF+vr+s+ kk+k n i ++++vCs+eg+++ +k++ XP_019167874.1 56 EFYNNYASVAGFDVRRSSDKKNKYNI-ILRKKLVCSREGYKAGKKSD 101 6***************99997776.************998877 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MDSSSTGAPT TGGDVDEEHC YMNISPSGTK IWLTACDTSI KPFVGQLFAT LDEGVEFYNN 60 YASVAGFDVR RSSDKKNKYN IILRKKLVCS REGYKAGKKS DPPETPPAIT VIDQDPAMKV 120 AIAQEFPETR HRYCMWHIMT KVGDKVGTDL ARNEEFRREL NTVVWNDAST TANFEHAWKA 180 VMEKYAITEN SWLKHMYDER ASWVPACFEG VFMGRLLRTT SRSEAENRIF RSNTNKHLCL 240 TEFFIRFEST EEIIAGCFEC RVRAVTIGDG IKTYEVDDKR GTQYGLTVED VTMITHCPCR 300 MCLGIAKGDS LKLQQMCSVL SDMETTWCGH EEVQVDAASG KQAIMESYCG VPAPETITVH 360 QPPVTSNKGS GKRMRSAKEL AMKEQNRKKR TCKTCGMADG HNSKSCPQK

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MDSSSTGAPT TGGDVDEEHC YMNISPSGTK IWLTACDTSI KPFVGQLFAT LDEGVEFYNN  60
YASVAGFDVR RSSDKKNKYN IILRKKLVCS REGYKAGKKS DPPETPPAIT VIDQDPAMKV  120
AIAQEFPETR HRYCMWHIMT KVGDKVGTDL ARNEEFRREL NTVVWNDAST TANFEHAWKA  180
VMEKYAITEN SWLKHMYDER ASWVPACFEG VFMGRLLRTT SRSEAENRIF RSNTNKHLCL  240
TEFFIRFEST EEIIAGCFEC RVRAVTIGDG IKTYEVDDKR GTQYGLTVED VTMITHCPCR  300
MCLGIAKGDS LKLQQMCSVL SDMETTWCGH EEVQVDAASG KQAIMESYCG VPAPETITVH  360
QPPVTSNKGS GKRMRSAKEL AMKEQNRKKR TCKTCGMADG HNSKSCPQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-21	FAR1 family protein