PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167873.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 306aa    MW: 34942.5 Da    PI: 8.5907
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.61.6e-2147140290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +Y++YA+ +GF+vrks+  k+ r g i k+++vC++eg+++ + ++      t++++r+r+++r+gC ak++ +++++g+++v+k+e+ H+H l+
  XP_019167873.1  47 YYKTYASVTGFDVRKSSDIKN-RYGIILKKKLVCNREGYKDAKPNTttdqnnTTQTKRRRPSNRVGCMAKIVFRRNSTGRYVVKKFEEGHTHCLC 140
                     8****************9998.7888**************999998899999999999**********************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MEEGGKSQHY VMDESQDGTS IWFTECDPSI KPFVDQVFDT LEDGIAYYKT YASVTGFDVR  60
KSSDIKNRYG IILKKKLVCN REGYKDAKPN TTTDQNNTTQ TKRRRPSNRV GCMAKIVFRR  120
NSTGRYVVKK FEEGHTHCLC EESYKPFLKG NRKVDIGHQQ FIVNCSKVNI GASKSHDLYA  180
EMVEGVENVG ATQQDFKNYR REILAYMQGG DAQMVISKYL DLKSDYDDMY FEYEANENDQ  240
LARVFWADGM ARKQYSVFGD VVSFDATYKT NRYAPHLRAA LTLVRVDGLT PTGVRVRAVG  300
LCVARL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-26FAR1 family protein