PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167606.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 457aa MW: 50879.8 Da PI: 6.1979

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.4	1.5e-17	153	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g XP_019167606.1 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTADAAARAYDRAAIKFRG 202 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MLDLNLSVVY EESRFEKRPE GSGADESGTS NSSMLNAEAS SNAGDDDTCS TRAGDVVPFN 60 FDILKVGSRN EDDDGDEENR QAALPEFVTR QLFPVCESAW NTGQTSGRQD WAMDLSFRQA 120 EMRMEEQQQQ QQPPPQPQQQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTADAAA RAYDRAAIKF RGVDADINFH LSDYEEDMKQ MENLSKEEFV HTLRRQSTGF 240 SRGSSKYRGV TLHKCGRWEA RMGQFLGKKA YDKAAIKCNG REAVTNFEPS TYDGGTAFDP 300 HNEGSQHDLD LNLGITSSSP NKNMDKCDQT TIGSSHLNRQ PFTSEQPQLL NGFYSHFLPN 360 YEQQIASEKR MGIGGSSQGS PNWMREMRYG STPVAMFSTA AASSGFSTPA TNNSTTAFTS 420 ALAGSPYSAA LSLPSMNLSF ASYPNTSQHN YHIRPPP

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MLDLNLSVVY EESRFEKRPE GSGADESGTS NSSMLNAEAS SNAGDDDTCS TRAGDVVPFN  60
FDILKVGSRN EDDDGDEENR QAALPEFVTR QLFPVCESAW NTGQTSGRQD WAMDLSFRQA  120
EMRMEEQQQQ QQPPPQPQQQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTADAAA RAYDRAAIKF RGVDADINFH LSDYEEDMKQ MENLSKEEFV HTLRRQSTGF  240
SRGSSKYRGV TLHKCGRWEA RMGQFLGKKA YDKAAIKCNG REAVTNFEPS TYDGGTAFDP  300
HNEGSQHDLD LNLGITSSSP NKNMDKCDQT TIGSSHLNRQ PFTSEQPQLL NGFYSHFLPN  360
YEQQIASEKR MGIGGSSQGS PNWMREMRYG STPVAMFSTA AASSGFSTPA TNNSTTAFTS  420
ALAGSPYSAA LSLPSMNLSF ASYPNTSQHN YHIRPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	1e-102	AP2 family protein