PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167605.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 471aa MW: 52479.6 Da PI: 5.8511

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.3	1.6e-17	153	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g XP_019167605.1 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTADAAARAYDRAAIKFRG 202 78*****************......55**********************997 PP
2	AP2	41.2	4e-13	245	295	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g XP_019167605.1 245 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 295 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MLDLNLSVVY EESRFEKRPE GSGADESGTS NSSMLNAEAS SNAGDDDTCS TRAGDVVPFN 60 FDILKVGSRN EDDDGDEENR QAALPEFVTR QLFPVCESAW NTGQTSGRQD WAMDLSFRQA 120 EMRMEEQQQQ QQPPPQPQQQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTADAAA RAYDRAAIKF RGVDADINFH LSDYEEDMKQ MENLSKEEFV HTLRRQSTGF 240 SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV EAARAYDKAA IKCNGREAVT 300 NFEPSTYDGG TAFDPHNEGS QHDLDLNLGI TSSSPNKNMD KCDQTTIGSS HLNRQPFTSE 360 QPQLLNGFYS HFLPNYEQIA SEKRMGIGGS SQGSPNWMRE MRYGSTPVAM FSTAAASSGF 420 STPATNNSTT AFTSALAGSP YSAALSLPSM NLSFASYPNT SQHNYHIRPP P

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MLDLNLSVVY EESRFEKRPE GSGADESGTS NSSMLNAEAS SNAGDDDTCS TRAGDVVPFN  60
FDILKVGSRN EDDDGDEENR QAALPEFVTR QLFPVCESAW NTGQTSGRQD WAMDLSFRQA  120
EMRMEEQQQQ QQPPPQPQQQ VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTADAAA RAYDRAAIKF RGVDADINFH LSDYEEDMKQ MENLSKEEFV HTLRRQSTGF  240
SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV EAARAYDKAA IKCNGREAVT  300
NFEPSTYDGG TAFDPHNEGS QHDLDLNLGI TSSSPNKNMD KCDQTTIGSS HLNRQPFTSE  360
QPQLLNGFYS HFLPNYEQIA SEKRMGIGGS SQGSPNWMRE MRYGSTPVAM FSTAAASSGF  420
STPATNNSTT AFTSALAGSP YSAALSLPSM NLSFASYPNT SQHNYHIRPP P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-112	AP2 family protein