PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167577.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 840aa MW: 93351 Da PI: 7.0797

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60	7.3e-19	150	239	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA vGF+ rk +++++ r+g +++++ Cs+eg+++ + + t+k r+r+++r+gCkak++ k++++g + v+ le+ H+H ++ XP_019167577.1 150 FYKQYAGAVGFDCRKGSTRRR-RDGVVVEKHVLCSREGFKHIISVDakTNKVTRRRVTNRVGCKAKVVYKLKSNGLYSVHYLEERHTHLMC 239 9*************98886.9999**********976655447888899*******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence
MEPGMLSCEA VNSDSVGGVC DKVNSTDIGG CDELNLDSVG VEGNGGCDEV KSSNVCVECS 60 DVGCDEVKSS DACVEGSDGG CNEGNSTEVG VEGNGGCCNE DCPTDVGVGG SVCDLEISPG 120 LTKYWRPVCA DSLKPHVGQK FDSLDGAIAF YKQYAGAVGF DCRKGSTRRR RDGVVVEKHV 180 LCSREGFKHI ISVDAKTNKV TRRRVTNRVG CKAKVVYKLK SNGLYSVHYL EERHTHLMCS 240 IIAKQFLKVN RSLDAGHQMF IASCFRANIG SVRSYRLFKE IVGDYSSVGA TGVDFKNFKR 300 DLMAYILNGD AQLFIDTLFK RREVCEAFDF EYDVDDGDQL SRVFWANAVS RKNFALFGDV 360 VSFDATYRTN RYNLVFVPFT GIDNHKRSIT FGAGLLTRED VDSYVWLLEK FKKTMRHDPI 420 CVVTDQDPAV KLAVARVFGT SKHRFCMWHI MCKVGEKVGP VLSKDEVFRR KLNCIVWNKS 480 LDAKAFEDAW SHIMEEYGLG DNGWFRYLFE SRTFWASPYF HDEFMSGLVR TTSRSESQNS 540 FFGSFSNGHS SLVEFLVHFG SAIGAQRHTQ AKMNADCESC FPVLKTPLAL EKHAMDVYTI 600 SVFYDVQVEI CAACFSCRVA SLCNCDGHVS YVINDGDQRP WCVELVLSDY TATCSCKMFE 660 RMGLLCRHIF LVFKDCGLES IPSRYLVDRW TKGACLKPIF DIDDTVVDQS SKVENVRVLT 720 NILWSDIYAC VGLADGNIER LSQLRRVICE QRQLFLQDGS ENGSGVAGGS KQSVINSVCG 780 VVSQQSTVEV HDPIQAKNKG SGKRLKSARE KAARKCVKQS RKCHTCDEYG HNSRTCPLNG

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence

MEPGMLSCEA VNSDSVGGVC DKVNSTDIGG CDELNLDSVG VEGNGGCDEV KSSNVCVECS  60
DVGCDEVKSS DACVEGSDGG CNEGNSTEVG VEGNGGCCNE DCPTDVGVGG SVCDLEISPG  120
LTKYWRPVCA DSLKPHVGQK FDSLDGAIAF YKQYAGAVGF DCRKGSTRRR RDGVVVEKHV  180
LCSREGFKHI ISVDAKTNKV TRRRVTNRVG CKAKVVYKLK SNGLYSVHYL EERHTHLMCS  240
IIAKQFLKVN RSLDAGHQMF IASCFRANIG SVRSYRLFKE IVGDYSSVGA TGVDFKNFKR  300
DLMAYILNGD AQLFIDTLFK RREVCEAFDF EYDVDDGDQL SRVFWANAVS RKNFALFGDV  360
VSFDATYRTN RYNLVFVPFT GIDNHKRSIT FGAGLLTRED VDSYVWLLEK FKKTMRHDPI  420
CVVTDQDPAV KLAVARVFGT SKHRFCMWHI MCKVGEKVGP VLSKDEVFRR KLNCIVWNKS  480
LDAKAFEDAW SHIMEEYGLG DNGWFRYLFE SRTFWASPYF HDEFMSGLVR TTSRSESQNS  540
FFGSFSNGHS SLVEFLVHFG SAIGAQRHTQ AKMNADCESC FPVLKTPLAL EKHAMDVYTI  600
SVFYDVQVEI CAACFSCRVA SLCNCDGHVS YVINDGDQRP WCVELVLSDY TATCSCKMFE  660
RMGLLCRHIF LVFKDCGLES IPSRYLVDRW TKGACLKPIF DIDDTVVDQS SKVENVRVLT  720
NILWSDIYAC VGLADGNIER LSQLRRVICE QRQLFLQDGS ENGSGVAGGS KQSVINSVCG  780
VVSQQSTVEV HDPIQAKNKG SGKRLKSARE KAARKCVKQS RKCHTCDEYG HNSRTCPLNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-85	FAR1 family protein