PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167553.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 369aa MW: 41957.7 Da PI: 8.9629

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.7	4.4e-19	45	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY +YA+ +GF+vr ++ k+ r+gei++r +vCs++g + ++k + k+rr+r+++r++C+ak+ +ke +++e+ +++eH XP_019167553.1 45 QFYTDYARACGFDVRLNTLKRD-RDGEIVMRYLVCSRQGVKGGGTRKpipehgstggKPKQRRRRVSNRVQCRAKICFNKEGPEEFEIGIFVEEH 138 6**************99998.8999***********999999****99999****************************** PP FAR1 86 nHela 90 +H ++ XP_019167553.1 139 THRMC 143 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MGGESSSHTR VGFESVHPQF WRPVVDSAIT PAVGRRFTSL AEGIQFYTDY ARACGFDVRL 60 NTLKRDRDGE IVMRYLVCSR QGVKGGGTRK PIPEHGSTGG KPKQRRRRVS NRVQCRAKIC 120 FNKEGPEEFE IGIFVEEHTH RMCSETSKYF MRMNQKLDAA QQSFVASCVK ANIGSSKSLN 180 LCREVTGSYA NVGATETEFH NFKRDLQTYV AAYDGEMIIE KFRSKREACE KFYSDHYLDG 240 ENRLTRLFWA DSIGRSNFPL FGDVISFDAT YGTNRYSLVF VPFTGVDNHK RCITFAAGLL 300 IKEDVESYAW LLDRFKVAMG KSPTCVVTDQ DPAMKVAVAQ VWSESRHRFC MWHIMTKVNE 360 KIGPDLVKD

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MGGESSSHTR VGFESVHPQF WRPVVDSAIT PAVGRRFTSL AEGIQFYTDY ARACGFDVRL  60
NTLKRDRDGE IVMRYLVCSR QGVKGGGTRK PIPEHGSTGG KPKQRRRRVS NRVQCRAKIC  120
FNKEGPEEFE IGIFVEEHTH RMCSETSKYF MRMNQKLDAA QQSFVASCVK ANIGSSKSLN  180
LCREVTGSYA NVGATETEFH NFKRDLQTYV AAYDGEMIIE KFRSKREACE KFYSDHYLDG  240
ENRLTRLFWA DSIGRSNFPL FGDVISFDAT YGTNRYSLVF VPFTGVDNHK RCITFAAGLL  300
IKEDVESYAW LLDRFKVAMG KSPTCVVTDQ DPAMKVAVAQ VWSESRHRFC MWHIMTKVNE  360
KIGPDLVKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-40	FAR1 family protein