PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167347.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 641aa MW: 73914.4 Da PI: 8.2993

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.2	1.1e-22	63	146	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+e+GF+vr+++s ++++ge + + ++Cs +g+++ ++ + r+r+etrtgC a++++++ ++++w+v ++ leHnH l XP_019167347.1 63 NYYNCYAREAGFRVRVKNSWFKRNSGEKYGAVLCCSSQGFKRIKDVN-----RSRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHVL 146 69***************************************9988.....99*******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MEEVSPDSKQ AIIGQNNEIL QDTDGQQIES CGLDGQNGIP EVQKEFVAPA VGMEFESYDD 60 AYNYYNCYAR EAGFRVRVKN SWFKRNSGEK YGAVLCCSSQ GFKRIKDVNR SRKETRTGCP 120 AMIRMRLVDS KRWRVLEVTL EHNHVLGAKL YKSMKKISSG AKRKLEANSN TEVQTVKLYR 180 ALVIDTGGNG STNSGAREAR GSTDYSGHLN LRKGHLRNVF WVDARSRAAC CYFSDVIYFD 240 NTYLLNKFEI PLVALVGINH HGQSVLLGCG LLAGETMDSY IWVFKAWLTC TSGQLPQTII 300 TDRCKTLQSA VAEMFPRSVH CYDLSHIMRK VPEKLGGLRN YDSIRKAFTK TIYETLKPID 360 FEAAWGFMIQ RFEVGDHEWL HSLYDDRSRW APVYLKDTFF AGMATARPTE ILTAFFDRYL 420 HKQTPLKEFL DKYELALQKK HKEESIADME SRSSNHELKT RCSFELQLSK VYTREIFKKF 480 QLEVEEMYSC FSTTQLHVDG PIIIFLVKER VLGEWNRREI RDYEVLYNRA AVEVRCICSC 540 FNFYGYLCRH ALCVLNFNGV EEIPSKYILP RWKKDYKRVC VPDPGSNPVN GTEQVQWFNQ 600 LYRSALQVVE EGVISLDHYK AALQAFEESL SRVHSIEEKH K

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MEEVSPDSKQ AIIGQNNEIL QDTDGQQIES CGLDGQNGIP EVQKEFVAPA VGMEFESYDD  60
AYNYYNCYAR EAGFRVRVKN SWFKRNSGEK YGAVLCCSSQ GFKRIKDVNR SRKETRTGCP  120
AMIRMRLVDS KRWRVLEVTL EHNHVLGAKL YKSMKKISSG AKRKLEANSN TEVQTVKLYR  180
ALVIDTGGNG STNSGAREAR GSTDYSGHLN LRKGHLRNVF WVDARSRAAC CYFSDVIYFD  240
NTYLLNKFEI PLVALVGINH HGQSVLLGCG LLAGETMDSY IWVFKAWLTC TSGQLPQTII  300
TDRCKTLQSA VAEMFPRSVH CYDLSHIMRK VPEKLGGLRN YDSIRKAFTK TIYETLKPID  360
FEAAWGFMIQ RFEVGDHEWL HSLYDDRSRW APVYLKDTFF AGMATARPTE ILTAFFDRYL  420
HKQTPLKEFL DKYELALQKK HKEESIADME SRSSNHELKT RCSFELQLSK VYTREIFKKF  480
QLEVEEMYSC FSTTQLHVDG PIIIFLVKER VLGEWNRREI RDYEVLYNRA AVEVRCICSC  540
FNFYGYLCRH ALCVLNFNGV EEIPSKYILP RWKKDYKRVC VPDPGSNPVN GTEQVQWFNQ  600
LYRSALQVVE EGVISLDHYK AALQAFEESL SRVHSIEEKH K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein