PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167346.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 670aa MW: 77470.4 Da PI: 8.0205

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167346.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.1	1.2e-22	63	146	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YA+e+GF+vr+++s ++++ge + + ++Cs +g+++ ++ + r+r+etrtgC a++++++ ++++w+v ++ leHnH l XP_019167346.1 63 NYYNCYAREAGFRVRVKNSWFKRNSGEKYGAVLCCSSQGFKRIKDVN-----RSRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHVL 146 69***************************************9988.....99*******************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence
MEEVSPDSKQ AIIGQNNEIL QDTDGQQIES CGLDGQNGIP EVQKEFVAPA VGMEFESYDD 60 AYNYYNCYAR EAGFRVRVKN SWFKRNSGEK YGAVLCCSSQ GFKRIKDVNR SRKETRTGCP 120 AMIRMRLVDS KRWRVLEVTL EHNHVLGAKL YKSMKKISSG AKRKLEANSN TEVQTVKLYR 180 ALVIDTGGNG STNSGAREAR GSTDYSGHLN LRKGDTQAMY NYFCRMQLTN PNFFYMMDLN 240 DEGHLRNVFW VDARSRAACC YFSDVIYFDN TYLLNKFEIP LVALVGINHH GQSVLLGCGL 300 LAGETMDSYI WVFKAWLTCT SGQLPQTIIT DRCKTLQSAV AEMFPRSVHC YDLSHIMRKV 360 PEKLGGLRNY DSIRKAFTKT IYETLKPIDF EAAWGFMIQR FEVGDHEWLH SLYDDRSRWA 420 PVYLKDTFFA GMATARPTEI LTAFFDRYLH KQTPLKEFLD KYELALQKKH KEESIADMES 480 RSSNHELKTR CSFELQLSKV YTREIFKKFQ LEVEEMYSCF STTQLHVDGP IIIFLVKERV 540 LGEWNRREIR DYEVLYNRAA VEVRCICSCF NFYGYLCRHA LCVLNFNGVE EIPSKYILPR 600 WKKDYKRVCV PDPGSNPVNG TEQVQWFNQL YRSALQVVEE GVISLDHYKA ALQAFEESLS 660 RVHSIEEKHK

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence

MEEVSPDSKQ AIIGQNNEIL QDTDGQQIES CGLDGQNGIP EVQKEFVAPA VGMEFESYDD  60
AYNYYNCYAR EAGFRVRVKN SWFKRNSGEK YGAVLCCSSQ GFKRIKDVNR SRKETRTGCP  120
AMIRMRLVDS KRWRVLEVTL EHNHVLGAKL YKSMKKISSG AKRKLEANSN TEVQTVKLYR  180
ALVIDTGGNG STNSGAREAR GSTDYSGHLN LRKGDTQAMY NYFCRMQLTN PNFFYMMDLN  240
DEGHLRNVFW VDARSRAACC YFSDVIYFDN TYLLNKFEIP LVALVGINHH GQSVLLGCGL  300
LAGETMDSYI WVFKAWLTCT SGQLPQTIIT DRCKTLQSAV AEMFPRSVHC YDLSHIMRKV  360
PEKLGGLRNY DSIRKAFTKT IYETLKPIDF EAAWGFMIQR FEVGDHEWLH SLYDDRSRWA  420
PVYLKDTFFA GMATARPTEI LTAFFDRYLH KQTPLKEFLD KYELALQKKH KEESIADMES  480
RSSNHELKTR CSFELQLSKV YTREIFKKFQ LEVEEMYSCF STTQLHVDGP IIIFLVKERV  540
LGEWNRREIR DYEVLYNRAA VEVRCICSCF NFYGYLCRHA LCVLNFNGVE EIPSKYILPR  600
WKKDYKRVCV PDPGSNPVNG TEQVQWFNQL YRSALQVVEE GVISLDHYKA ALQAFEESLS  660
RVHSIEEKHK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein