PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167282.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 540aa MW: 60335 Da PI: 7.5626

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167282.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.6e-21	66	150	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019167282.1 66 VYNSYAYRLGFSVRKGHQRYKGATNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 150 7**************************************99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MEDGTEQMNS GVGDLHSIQV SEGIVDGSVS SDQVDVDVDV DGSSSIPVDQ DLVGLVVSNA 60 DEAFEVYNSY AYRLGFSVRK GHQRYKGATN TIQMKKFCCS KAGYKANSGV KAYSKIDTRT 120 GCGAFVQFDV GDDGLWTVTK HEKVHNHELC VFNKSHLLRS LRSVGDNQLL YLQGLKDSGV 180 ALADGIRFLK HQSGGSPLVG FTSRDAYNSI AADTVKRLDG TDSNSLIEIF RRRQSTETDF 240 FFDFELDLDA RLCSFFWRDG QMRRDYEVFG DLLVHDTTYR TNKYDMICGP FVGMNHHCMN 300 VMFGCGFLMN ERIESFVWLF KAFLRSMGGK SPQTIMTDQY AAMAAAISKV FPTSRHRLCI 360 WHIGENSKKH IKTLRNSKDF LDMFNYVLKY TETEAEFQFY WTRKFQRLVV SSQDSSVARK 420 LCDEAVDDVK KNVEAEVGHV HIEECGVSSS SGGVQNPSSR RLKGERNKRR TGVIEKKYSL 480 ARGRRSAANK AALSTKGVVQ SLVLENISKL AGDGYLVHPS SSSSDFVQFS KGLDDSIVVD

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MEDGTEQMNS GVGDLHSIQV SEGIVDGSVS SDQVDVDVDV DGSSSIPVDQ DLVGLVVSNA  60
DEAFEVYNSY AYRLGFSVRK GHQRYKGATN TIQMKKFCCS KAGYKANSGV KAYSKIDTRT  120
GCGAFVQFDV GDDGLWTVTK HEKVHNHELC VFNKSHLLRS LRSVGDNQLL YLQGLKDSGV  180
ALADGIRFLK HQSGGSPLVG FTSRDAYNSI AADTVKRLDG TDSNSLIEIF RRRQSTETDF  240
FFDFELDLDA RLCSFFWRDG QMRRDYEVFG DLLVHDTTYR TNKYDMICGP FVGMNHHCMN  300
VMFGCGFLMN ERIESFVWLF KAFLRSMGGK SPQTIMTDQY AAMAAAISKV FPTSRHRLCI  360
WHIGENSKKH IKTLRNSKDF LDMFNYVLKY TETEAEFQFY WTRKFQRLVV SSQDSSVARK  420
LCDEAVDDVK KNVEAEVGHV HIEECGVSSS SGGVQNPSSR RLKGERNKRR TGVIEKKYSL  480
ARGRRSAANK AALSTKGVVQ SLVLENISKL AGDGYLVHPS SSSSDFVQFS KGLDDSIVVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-52	FAR1 family protein