PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019167244.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BBR-BPC
Protein Properties Length: 314aa    MW: 34496.4 Da    PI: 10.2436
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019167244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind314.92.7e-9613141301
       GAGA_bind   1 mdddgsre.rnkgyyepa.aslkenlglqlmssiaerdaki......rernlalsekkaav....aerd....................maflqr 63 
                     md +g+ + +n+g+++p+ ++lk++lglqlm +iae+          r+r++ ++ ++  +    a                       +++ +r
  XP_019167244.1   1 MDGHGNLNfKNWGFFDPTaTALKSHLGLQLMPTIAEKPLFGggggggRDRHHHFQPHHPHLsavmA--StspglyqhhrvggisesampVEY-MR 92 
                     9999**99********9999**************98876558999995555533333322222331..134566666677999999988889.99 PP

       GAGA_bind  64 dkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakk 158
                     d+++++        ++k+l++l  ++   +++ + ++vl++t+s++s+++l++++l+++ +  +++e + ++++++         kk+++ ++++
  XP_019167244.1  93 DAWFNH-------SREKCLNVLSGNQ---HHHQPVYGVLPETSSAQSIHTLQHTNLSKTETASSQMELVCEEKVVS------ALVKKREGDKPQV 171
                     999999.......4556666665333...4556779**************99999988877766666554444444......3333334556667 PP

       GAGA_bind 159 pkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrga 253
                     +k++kakk+k+ ++ + ++ ++  + +r++a+k+s ++v+ng+s+D+s++PvPvCsCtG ++qCY+WG+GGWqSaCCtt++S yPLP+stkrrga
  XP_019167244.1 172 QKSPKAKKAKRGPRIPIDECTPTPSISRARAPKRSAEVVINGMSMDISGIPVPVCSCTGNPQQCYRWGSGGWQSACCTTNLSSYPLPMSTKRRGA 266
                     777777777777777766666655558******************************************************************** PP

       GAGA_bind 254 RiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     RiagrKmS gafkk+LekLa+eGy++snp+DLk +WAkHGtnkfvtir
  XP_019167244.1 267 RIAGRKMSLGAFKKVLEKLASEGYNFSNPIDLKPYWAKHGTNKFVTIR 314
                     ***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MDGHGNLNFK NWGFFDPTAT ALKSHLGLQL MPTIAEKPLF GGGGGGGRDR HHHFQPHHPH  60
LSAVMASTSP GLYQHHRVGG ISESAMPVEY MRDAWFNHSR EKCLNVLSGN QHHHQPVYGV  120
LPETSSAQSI HTLQHTNLSK TETASSQMEL VCEEKVVSAL VKKREGDKPQ VQKSPKAKKA  180
KRGPRIPIDE CTPTPSISRA RAPKRSAEVV INGMSMDISG IPVPVCSCTG NPQQCYRWGS  240
GGWQSACCTT NLSSYPLPMS TKRRGARIAG RKMSLGAFKK VLEKLASEGY NFSNPIDLKP  300
YWAKHGTNKF VTIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.16e-83BBR-BPC family protein