PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167220.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 426aa MW: 46558.2 Da PI: 8.4499

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.5e-30	137	193	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vk s++p sYY+Ct+++C+++kkve+s +++++ei+Y+g+Hnh+ XP_019167220.1 137 DDGYNWRKYGQKQVKRSQNPTSYYKCTHPNCSTRKKVETSL-EGEITEIVYKGSHNHP 193 8**************************************.*************8 PP
2	WRKY	103.9	8.9e-33	285	343	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct+ gCpv+k+ver+ +d+++v++tYeg+Hnh+ XP_019167220.1 285 LDDGYRWRKYGQKVVRGNPNPRSYYKCTTLGCPVRKHVERAPHDTRCVITTYEGKHNHD 343 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MAASSGTVYS TASSSFTDLL AGDVYPATAG GERSGPSPKF KSLSPPSLPL SPSSYFANLP 60 SPTQLLDSPV LLSDSNLLPS PTTGTFPAQP FNWNTTAALK QEDNGGFSDF SFLTNPQSNG 120 GNCSDYNHQN QALRRSDDGY NWRKYGQKQV KRSQNPTSYY KCTHPNCSTR KKVETSLEGE 180 ITEIVYKGSH NHPMPQTTRR SSAASPASSL TTLPENSSVS CGDDDFEQSS RKRELGGEEF 240 HEYDSNAKRW KGETGNENEG ISSLGSRTVR EPRVVVQTRS DIDILDDGYR WRKYGQKVVR 300 GNPNPRSYYK CTTLGCPVRK HVERAPHDTR CVITTYEGKH NHDVPAARGG GQYSLNRPIP 360 SNTNNSPAIA IRPSAIMSHH QSSFLAGILP TQGSGNLANH HQTQGTVFSG SREDLGDGMF 420 QQMLLP

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MAASSGTVYS TASSSFTDLL AGDVYPATAG GERSGPSPKF KSLSPPSLPL SPSSYFANLP  60
SPTQLLDSPV LLSDSNLLPS PTTGTFPAQP FNWNTTAALK QEDNGGFSDF SFLTNPQSNG  120
GNCSDYNHQN QALRRSDDGY NWRKYGQKQV KRSQNPTSYY KCTHPNCSTR KKVETSLEGE  180
ITEIVYKGSH NHPMPQTTRR SSAASPASSL TTLPENSSVS CGDDDFEQSS RKRELGGEEF  240
HEYDSNAKRW KGETGNENEG ISSLGSRTVR EPRVVVQTRS DIDILDDGYR WRKYGQKVVR  300
GNPNPRSYYK CTTLGCPVRK HVERAPHDTR CVITTYEGKH NHDVPAARGG GQYSLNRPIP  360
SNTNNSPAIA IRPSAIMSHH QSSFLAGILP TQGSGNLANH HQTQGTVFSG SREDLGDGMF  420
QQMLLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	3e-96	WRKY family protein