PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019167070.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 527aa MW: 57720.2 Da PI: 8.8658

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019167070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132	2e-41	155	230	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC++dl++ k+yh+rhkvCe+h+k+++v+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk++ XP_019167070.1 155 CQVHGCKKDLTSSKDYHKRHKVCEAHTKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPR 230 **************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MESWSYVSGE KGFVSEESIS VDDRSRNGFM SWELKAPCGI GGTMGDIETQ GIVGMGSQDL 60 ITKSLGNNHS IFAAPHSAFS GENHSSSKLS TSIVMESSSR DSSLIDLKLG GIPDHRATQI 120 NKSHKPNHPA LSSAQSSTPV KRTRAGGQNS QPPFCQVHGC KKDLTSSKDY HKRHKVCEAH 180 TKTSKVIVNG IEQRFCQQCS RFHLLAEFDD GKRSCRRRLA GHNERRRKPR TGLNSGRTGR 240 LFQSYPGTSF PGTAFTTSSF VCQDILPSSL PRPPKYEMND WYRNVKVEDG VDFSPPQLAI 300 PLINAHSQPR SLFPSYNPEK HCPPLARCKV SESSNNSYAH DMDVPNFVSH SLFNSNSEVL 360 NAFDSSSTIH GNHGLSGMSS SGHALSLLSS HSQSSSNHSS MVPTPHHLIS PGTNTLYNMA 420 HVSKKHLGAS PPASTSGLSS TLNSPGINSS DEARLEQMLF SNTGQNFAFN RVVQVPEYMN 480 EKNQICGEDG PTINLLQLSS RLQQVQHQRH SMQARQESDV FSGNRIT

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MESWSYVSGE KGFVSEESIS VDDRSRNGFM SWELKAPCGI GGTMGDIETQ GIVGMGSQDL  60
ITKSLGNNHS IFAAPHSAFS GENHSSSKLS TSIVMESSSR DSSLIDLKLG GIPDHRATQI  120
NKSHKPNHPA LSSAQSSTPV KRTRAGGQNS QPPFCQVHGC KKDLTSSKDY HKRHKVCEAH  180
TKTSKVIVNG IEQRFCQQCS RFHLLAEFDD GKRSCRRRLA GHNERRRKPR TGLNSGRTGR  240
LFQSYPGTSF PGTAFTTSSF VCQDILPSSL PRPPKYEMND WYRNVKVEDG VDFSPPQLAI  300
PLINAHSQPR SLFPSYNPEK HCPPLARCKV SESSNNSYAH DMDVPNFVSH SLFNSNSEVL  360
NAFDSSSTIH GNHGLSGMSS SGHALSLLSS HSQSSSNHSS MVPTPHHLIS PGTNTLYNMA  420
HVSKKHLGAS PPASTSGLSS TLNSPGINSS DEARLEQMLF SNTGQNFAFN RVVQVPEYMN  480
EKNQICGEDG PTINLLQLSS RLQQVQHQRH SMQARQESDV FSGNRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	7e-50	SBP family protein