PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166981.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 323aa MW: 35779.1 Da PI: 7.0993

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166981.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl XP_019166981.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.8	7.7e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ +v++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_019166981.1 67 RGNFTDQEEKMIVHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TDQEEKMIVH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLMKVE 120 GSSEDGQDGN SSSSSHQSIS KGQWEKRLQT DIHMAKQALC DALSIQKPTP QPLQPVHALN 180 QPVQPSSGST YASSTENIAR LLQTWTKPVQ SRSNSETTIQ SSLNNNPSLG PGSSSSPSEG 240 TAFSSAAFDQ TVFGFNSYMD ENNPWVFPVE SKPQTVAPQN GNTSNNFGTQ LPLTFLEKWL 300 LDDANNVPAP DDLMEMGMGI DLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-101	MYB family protein