PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166964.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 603aa MW: 69113.8 Da PI: 8.7697

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57	6.3e-18	43	127	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++ Fsvrk +++++ +++i +++f+Csk +++++ k ++ tr+gC+ ++ +dg w vtk e+ HnHel+ XP_019166964.1 43 VYNSYAYRLRFSVRKGHQRYKGSSNTIQMKKFCCSKASYKANSGVK----AYSKIDTRIGCRTFVQFDVGDDGLWTVTKHEKVHNHELC 127 7******************99999*********9998877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MLMDLHQFQE LYVNGNGYYC VIFAVDQDLV GLVVSNADEA FEVYNSYAYR LRFSVRKGHQ 60 RYKGSSNTIQ MKKFCCSKAS YKANSGVKAY SKIDTRIGCR TFVQFDVGDD GLWTVTKHEK 120 VHNHELCVFN KSHLLRSHRS VGDNQLLYLQ GLKDSGVALA DGIRFLKHQS GGSPLVGFTS 180 RDAYNSMAAD TVKRRQSTET DFFFDFELDL DARLCSFFWR DGQMRRDYEV FGDLLVHDTT 240 YRTNKYDMIC GPFVGMNHHC MNVMFGCGFL MNEWIESFVW LFKAFSRSMR GKSPQTIMTD 300 QCAAMAAAIS KVFQHHVIVF AYGISRLKLN FNSIGQEKLY DCREKWCPAF NKDYFSGGIL 360 SSQRSETTNH SISRRLSKTA GLCDFYSSFV SVISEWRSKE NGEDFRCAQG VPAMMMEHVK 420 LLSHAREVYT IEIYFLFEEQ FMKGSACHQE MVLNDGRQQK YHVWRPDIDI ISIPDKYILK 480 RWTKKVIDGR NVNIDSMVYN VGVPPSIWVF DISRKFQRLV VSSQDSSVAR KLCDEAVDDV 540 KKKVEAEVGH VHIEECGVSS SSGGVQNPSS RRLKGERNKR RSGVIEKKYS LARGEGVLQI 600 KLH

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MLMDLHQFQE LYVNGNGYYC VIFAVDQDLV GLVVSNADEA FEVYNSYAYR LRFSVRKGHQ  60
RYKGSSNTIQ MKKFCCSKAS YKANSGVKAY SKIDTRIGCR TFVQFDVGDD GLWTVTKHEK  120
VHNHELCVFN KSHLLRSHRS VGDNQLLYLQ GLKDSGVALA DGIRFLKHQS GGSPLVGFTS  180
RDAYNSMAAD TVKRRQSTET DFFFDFELDL DARLCSFFWR DGQMRRDYEV FGDLLVHDTT  240
YRTNKYDMIC GPFVGMNHHC MNVMFGCGFL MNEWIESFVW LFKAFSRSMR GKSPQTIMTD  300
QCAAMAAAIS KVFQHHVIVF AYGISRLKLN FNSIGQEKLY DCREKWCPAF NKDYFSGGIL  360
SSQRSETTNH SISRRLSKTA GLCDFYSSFV SVISEWRSKE NGEDFRCAQG VPAMMMEHVK  420
LLSHAREVYT IEIYFLFEEQ FMKGSACHQE MVLNDGRQQK YHVWRPDIDI ISIPDKYILK  480
RWTKKVIDGR NVNIDSMVYN VGVPPSIWVF DISRKFQRLV VSSQDSSVAR KLCDEAVDDV  540
KKKVEAEVGH VHIEECGVSS SSGGVQNPSS RRLKGERNKR RSGVIEKKYS LARGEGVLQI  600
KLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-43	FAR1 family protein