PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166905.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 703aa MW: 80612 Da PI: 8.8834

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166905.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.2	7.2e-20	11	111	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA++vGF++r s+ + r+++ t+++ vC++eg++++ ++ ++ +r+r+++rtgC+a++ k + ++v+++ + XP_019166905.1 11 EFYNHYATKVGFDTRSSSVVTA-RDETKTQKQIVCNREGFKNTGAQHchsqsssdagkgPSRPKRRRVSNRTGCRARIIFKYIGAAGYQVATFIE 104 6*************998887.77779***********999999***999889999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019166905.1 105 KHNHNMS 111 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MIFKTLDVGI EFYNHYATKV GFDTRSSSVV TARDETKTQK QIVCNREGFK NTGAQHCHSQ 60 SSSDAGKGPS RPKRRRVSNR TGCRARIIFK YIGAAGYQVA TFIEKHNHNM SSVLARQFLK 120 GNRNISSVHQ KFILDCAKAN IGASKSHGLY SHIVGDYSEV GATVVDFKNM SRLFWADPMS 180 KKNFAAFGDV VSFDATYSTN RYNLVFTPFT GVDNHRKCIT FGAGLLLKED IEFYVWLFEK 240 FKKAMGMEPR IIVTDQDPTM KVAIPTVFKQ ARHRYCMWHI MCKFGEKVGP TLNKDEEFRK 300 KLNPIVWTSS LEPPDFEKQW KELMEKYNLV EHNWFTTMFE AKNHRIPAYF RDVFMGGLLR 360 TTSRSESENY TYNRFTGPQS SLVEFMMNFD SALKSQRNTN AKLNSDNEGY NPDMKTPLGI 420 EKHASIVYTI TVFYQVQEEI CASCFKCMVL SVREDGGMLH YDIMEGKNKR FTVVHNVNDH 480 EAKCSCKMFE MVGLLCRHIF VVFRDLESIP LKYVVNRWTK DASLKATFEI DGVIYDQNGP 540 KDEKKMLLKK VWSDIHCCMD LEGSNIEQLA AFSQVINEQK QLLLSGKEKL SPQHSRRTVI 600 ESYCGSTEIS EINILPPKHA KNKGSGKRIK SSKELAMEKE EGRRCNFCGV RGDHHDTRTF 660 PLNPKNKDKQ KASNTLPACH NDKLSAKDDV WKLDDDIEEE NDE

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MIFKTLDVGI EFYNHYATKV GFDTRSSSVV TARDETKTQK QIVCNREGFK NTGAQHCHSQ  60
SSSDAGKGPS RPKRRRVSNR TGCRARIIFK YIGAAGYQVA TFIEKHNHNM SSVLARQFLK  120
GNRNISSVHQ KFILDCAKAN IGASKSHGLY SHIVGDYSEV GATVVDFKNM SRLFWADPMS  180
KKNFAAFGDV VSFDATYSTN RYNLVFTPFT GVDNHRKCIT FGAGLLLKED IEFYVWLFEK  240
FKKAMGMEPR IIVTDQDPTM KVAIPTVFKQ ARHRYCMWHI MCKFGEKVGP TLNKDEEFRK  300
KLNPIVWTSS LEPPDFEKQW KELMEKYNLV EHNWFTTMFE AKNHRIPAYF RDVFMGGLLR  360
TTSRSESENY TYNRFTGPQS SLVEFMMNFD SALKSQRNTN AKLNSDNEGY NPDMKTPLGI  420
EKHASIVYTI TVFYQVQEEI CASCFKCMVL SVREDGGMLH YDIMEGKNKR FTVVHNVNDH  480
EAKCSCKMFE MVGLLCRHIF VVFRDLESIP LKYVVNRWTK DASLKATFEI DGVIYDQNGP  540
KDEKKMLLKK VWSDIHCCMD LEGSNIEQLA AFSQVINEQK QLLLSGKEKL SPQHSRRTVI  600
ESYCGSTEIS EINILPPKHA KNKGSGKRIK SSKELAMEKE EGRRCNFCGV RGDHHDTRTF  660
PLNPKNKDKQ KASNTLPACH NDKLSAKDDV WKLDDDIEEE NDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	77	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-88	FAR1 family protein