PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166844.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MIKC_MADS

Protein Properties

Length: 246aa MW: 28419.2 Da PI: 8.0528

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.9	2.6e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCda+v vi+fs++gkl+ y+s XP_019166844.1 9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDADVGVIVFSTKGKLFQYAS 59 79***********************************************86 PP
2	K-box	104.4	1.4e-34	83	174	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++++ + +++ e+akLk++ie L++++Rh++GedL+sLs++eLq+Le+q+++s+k+iRskKn+l+le+i+elqkk ++l++en++ +++++e XP_019166844.1 83 TDQESQCNWSLEYAKLKARIEFLEKSKRHYMGEDLDSLSFRELQNLEHQIDSSIKHIRSKKNQLMLESISELQKKDRALKDENNKNQTQIKE 174 55666789********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD ADVGVIVFST KGKLFQYASD 60 SRMERILARY ERCSYVESLP NPTDQESQCN WSLEYAKLKA RIEFLEKSKR HYMGEDLDSL 120 SFRELQNLEH QIDSSIKHIR SKKNQLMLES ISELQKKDRA LKDENNKNQT QIKEREKEMA 180 EQPNLEQQEK QDTNSSSSYV ALQPVNSFNL GETYEIAGEG REIEDAQLPP PNIVMPQWLL 240 PHLTGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	3e-91	MIKC_MADS family protein