PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166676.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 777aa MW: 88928 Da PI: 8.1424

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.6	5.6e-10	93	138	2	47
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 Yn+YA ++GFsvrk k+++ + +++i++++f C k+g+++++kk+ XP_019166676.1 93 LYNDYAFRLGFSVRKGKQYYVSGSQTIKMKKFHCAKSGFKDNKKKR 138 7****************************************99885 PP

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence
MNNINDSNNR VDAIQVDDDI TKDVNALIHV EPISPIDVES IPVDGTSGGA TDESSPIGVQ 60 ASSSNAMDES SSIPVTQELL GITVTSIEEA FNLYNDYAFR LGFSVRKGKQ YYVSGSQTIK 120 MKKFHCAKSG FKDNKKKRFK LIVTKHVKDH NHELCPPSNS YLLRSHRSVV DTQLDYLKNL 180 KRSGVALSDG IRFLKHQSGG SPLVGFTPRD AYNSLHTDSI KRLDGTDSNS LIEIFRQRQS 240 NEPNFFFDFE LDEDARLCNF FWRDTRMKED FVLFGDLVVH DTTYRTNKYD MICGPFVGMN 300 HHCMNIMFGC GFLLNERTDS FVWLFKTFLR AMGGKCPQTI MTDQCAAMSA AISLVFPSAR 360 HRLCIWHIGE NSKKHIKCLR SQNGFMELFN FLLKYTDTEA EFEFYWNRLV TDYNCHKNVW 420 LNKLYDIREK WCPAFNKDYF SGGILSSQRS ETTNHSISRR LSKTSGLSDF YNSFVNVVSE 480 WRSKENGEDV RCSQGLPTMA LDHVKLLLHA RNVYTIEAYY LFEQQFLKGA ACHQESVASN 540 VDELKYHIWR PDIDIIRHEV CFNIKDMNIC CTCKFFSEMG ILCSHCLRIL NIHCVEKIPE 600 KYICRRWTKK VVEHRIMDIA SSSSILTVAS PIWVIDMGRK WQRLVLSSQD NCKARQVCEN 660 LIEDGRRRIE GEVGPICFDD LERSMRSSGI QNPERSGVKG DRNRRPVSTV QKKYNQASGR 720 KNYAKRVEYN TKAAVQSSMQ EVVSNIVGSG YLVHPNDTTS SELICVRSKS QNNSNDS

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence

MNNINDSNNR VDAIQVDDDI TKDVNALIHV EPISPIDVES IPVDGTSGGA TDESSPIGVQ  60
ASSSNAMDES SSIPVTQELL GITVTSIEEA FNLYNDYAFR LGFSVRKGKQ YYVSGSQTIK  120
MKKFHCAKSG FKDNKKKRFK LIVTKHVKDH NHELCPPSNS YLLRSHRSVV DTQLDYLKNL  180
KRSGVALSDG IRFLKHQSGG SPLVGFTPRD AYNSLHTDSI KRLDGTDSNS LIEIFRQRQS  240
NEPNFFFDFE LDEDARLCNF FWRDTRMKED FVLFGDLVVH DTTYRTNKYD MICGPFVGMN  300
HHCMNIMFGC GFLLNERTDS FVWLFKTFLR AMGGKCPQTI MTDQCAAMSA AISLVFPSAR  360
HRLCIWHIGE NSKKHIKCLR SQNGFMELFN FLLKYTDTEA EFEFYWNRLV TDYNCHKNVW  420
LNKLYDIREK WCPAFNKDYF SGGILSSQRS ETTNHSISRR LSKTSGLSDF YNSFVNVVSE  480
WRSKENGEDV RCSQGLPTMA LDHVKLLLHA RNVYTIEAYY LFEQQFLKGA ACHQESVASN  540
VDELKYHIWR PDIDIIRHEV CFNIKDMNIC CTCKFFSEMG ILCSHCLRIL NIHCVEKIPE  600
KYICRRWTKK VVEHRIMDIA SSSSILTVAS PIWVIDMGRK WQRLVLSSQD NCKARQVCEN  660
LIEDGRRRIE GEVGPICFDD LERSMRSSGI QNPERSGVKG DRNRRPVSTV QKKYNQASGR  720
KNYAKRVEYN TKAAVQSSMQ EVVSNIVGSG YLVHPNDTTS SELICVRSKS QNNSNDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	141	NKKKRFKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-89	FAR1 family protein