PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166642.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 388aa MW: 44535.6 Da PI: 5.8472

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.6	5.3e-35	14	105	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d++++ ++sws+n+++f+v++++ef +++LpkyFkhsnf+SF+RQLn+YgFkk + e+ weF+++ F +g+ +ll++ XP_019166642.1 14 FLAKTYEMVDDPSTDPIVSWSQNNKNFIVKNPQEFCRDLLPKYFKHSNFSSFIRQLNTYGFKKADPEQ---------WEFANEDFVRGHPHLLKN 99 9************************************************************99988.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i+r+k XP_019166642.1 100 IHRRKP 105 *985 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MDDACYSANA LPPFLAKTYE MVDDPSTDPI VSWSQNNKNF IVKNPQEFCR DLLPKYFKHS 60 NFSSFIRQLN TYGFKKADPE QWEFANEDFV RGHPHLLKNI HRRKPVHSHS AKNLQYSSPL 120 NESERQGYKD DIEKLKSVKE SLQLELKRHE EDQRGFAFQM QGLSERVQQV EQRHKGMLST 180 LSQMLDKSEL AIGLVPRLEL HDRKRRFPRN NYMDYQESSS QILTTSFVNG EWLDRLESSV 240 IFWENMLQSV CQTGIQLNSA LEVDESTSCA GSPSVSQLSG EVGANTSRID VNSEPNANPG 300 PIIPTKEQAE VPGIATNVPT RVNDVFWEQF LTENPGSTDP LEVQSERKDY DGRKSERKPV 360 DLAKFWWNKN NVNNLTEQPG HLTQAERT

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MDDACYSANA LPPFLAKTYE MVDDPSTDPI VSWSQNNKNF IVKNPQEFCR DLLPKYFKHS  60
NFSSFIRQLN TYGFKKADPE QWEFANEDFV RGHPHLLKNI HRRKPVHSHS AKNLQYSSPL  120
NESERQGYKD DIEKLKSVKE SLQLELKRHE EDQRGFAFQM QGLSERVQQV EQRHKGMLST  180
LSQMLDKSEL AIGLVPRLEL HDRKRRFPRN NYMDYQESSS QILTTSFVNG EWLDRLESSV  240
IFWENMLQSV CQTGIQLNSA LEVDESTSCA GSPSVSQLSG EVGANTSRID VNSEPNANPG  300
PIIPTKEQAE VPGIATNVPT RVNDVFWEQF LTENPGSTDP LEVQSERKDY DGRKSERKPV  360
DLAKFWWNKN NVNNLTEQPG HLTQAERT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	1e-108	HSF family protein