PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019166563.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91812.7 Da    PI: 5.8684
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019166563.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-182683457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_019166563.1 26 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 83
                    5789****************************************************97 PP
2START159.82e-501633702204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  ++    +e+l+d++ W +++++ e+      g  g+++l 
  XP_019166563.1 163 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPI-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELL 256
                     7899******************************************************.7777777777***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++ +a+++l+p Rdf+++Ry+ +l+ g++vi+++S++ +   p+    s++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l+
  XP_019166563.1 257 YTQIYAPTTLAPaRDFWTLRYTTTLENGSLVICERSLSGTGAGPNataASQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLY 351
                     *****************************************99999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_019166563.1 352 ESSKVVAQKMTIAALRYIR 370
                     **************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MALVAQHHRE SSSGSIDRGH LDAGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILANIEPKQI KVWFQNRRCR EKQRKESSRL QGVNRKLSAL NKLLMEENDR LQKQVSQLVC  120
ENGFMRQQLQ TAPATTDGSC ESAVTTSQHS LRDANNPAGL LSIAEETLAE FLSKATGTAV  180
DWVQMPGMKP GPDSVGIFAI SHSCSGVAAR ACGLVSLEPI KIAEILKDRP SWFRDCRSLE  240
VFTMFPAGNG GTIELLYTQI YAPTTLAPAR DFWTLRYTTT LENGSLVICE RSLSGTGAGP  300
NATAASQFVR AETLPSGYLI RPCEGGGSII HIVDHLNLEA WSVPEVLRPL YESSKVVAQK  360
MTIAALRYIR QIAQETSGEV VYGLGRQPAV LRTFSQRLSR GFNDAINGFN DDGWSVLSGD  420
GAEDVTVAIN STKNLATSNT LQMLGGILCA KASMLLQNVP PAVLVRFLRE HRSEWADFNV  480
DAYFAAALKS SSYSYPGMRP TRFTGSQIIM PLGQTIEHEE MLEVIRLEGH PLDNEDAFLS  540
RDIHLLQMCS GIDENAVGAC SELVFAPIDE MFPDDALLIP SGFRIIPLES KSNDVQDALP  600
AQRTLDLTSS LEVGLATTNH AVGSASASYT ARSVLTIAFQ FPFENNLQDN VATMARQYVR  660
SVISSVQRVA MAISPSGSGP SLGPKLSAIS PEALPLAQWI CQSYSYHMGA ELLGGDSMGG  720
ESVLKNLWNH HDAILCCSVK SLPVFIFANK AGLDMLETTL VGLQDIALDK IFDDSGRKAL  780
YSELAKIMQQ GYAYMPGGIC MSAMGRHVSY EQAIAWKVLL DDENTVHCLA FSFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein