PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166533.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 834aa MW: 95207.8 Da PI: 8.076

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.9	1.1e-20	137	223	3	91
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn+YA ++GFs+rk k+++ + ++ +++ f+Csk+g+r ++ ++ ++ +tr gC+a+ + +++gkw+vtk ++eHnHel+p XP_019166533.1 137 YNDYAFRMGFSTRKGKQYYVTGTRILKTKVFCCSKSGFRIIPDNP--NKCYSKIVTRSGCNAMCQFDIDSNGKWVVTKHVKEHNHELCP 223 9*****************9999************99988..88999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 834 aa Download sequence
MNKIVVTNRI EEIDSNSMIV DENSSVKIIF RSPVNVFRRL RSMFRVQILS TIMSIFQDHV 60 TQFHADIAVV SVIEQYSVGF SDLKCQFIFY LVADDFDNSI AVDGTSEHVI VEESAIPDNE 120 ELLGLSVGSI EDAFGKYNDY AFRMGFSTRK GKQYYVTGTR ILKTKVFCCS KSGFRIIPDN 180 PNKCYSKIVT RSGCNAMCQF DIDSNGKWVV TKHVKEHNHE LCPASSSYML RSHRKVSENQ 240 LTCLKNMKRS GVPLSDGIRF LKCQSGGSPF VGFTPRDAYN MIYSDSAKHL DGTDSNSLIE 300 IFRRRQMDES DFYFEFELDE DARLCNFFWR DGQMKADYDL FGDLVVHDTT YRTNRYDMIC 360 APFVGMNHHC MNVMFGCGFL LNERIESFVW LFKVFVRSMG GKHPQTVMTD QCAAMAAGIA 420 QVFSNSNHRL CIWHIGENSK KHIKSLRNKK GFLELFNFLL KYIDTEAEFE FYWTRMMTEY 480 GCHKNVWLNK LYSIREKWCP AFSKEYFSGG ILSSQRSEST NHSIPRRLSK TAGLCDFYNS 540 FVSVVSEWRS RENGENVRCS QGLAPMVMNH VKLLSHARDI YTIEIYYLFE EQFLKGTSCH 600 QESVGGSGNE IKYHVWRPDV DLIRHEVYFK VNDLDISCSC MLFSEMGILC SHSLRIFNVH 660 CVAAIPDKYI IKRWTKKGIE DRIISSDSSL NILSIASSVW VIQMGRKFQQ LVLSSQANCK 720 AREVCENAFE DARRKVEGDI GPIVIEDGEE QIAGVIQNPA RNRAKGERNR RHISTIEKKY 780 NQVRGRKLGV KIAEMSTKAA VQASVEGVVA NIVGSGYFVH PSSGSHELGL VKSS

Sequence ? help Back to Top

Protein Sequence Length: 834 aa Download sequence

MNKIVVTNRI EEIDSNSMIV DENSSVKIIF RSPVNVFRRL RSMFRVQILS TIMSIFQDHV  60
TQFHADIAVV SVIEQYSVGF SDLKCQFIFY LVADDFDNSI AVDGTSEHVI VEESAIPDNE  120
ELLGLSVGSI EDAFGKYNDY AFRMGFSTRK GKQYYVTGTR ILKTKVFCCS KSGFRIIPDN  180
PNKCYSKIVT RSGCNAMCQF DIDSNGKWVV TKHVKEHNHE LCPASSSYML RSHRKVSENQ  240
LTCLKNMKRS GVPLSDGIRF LKCQSGGSPF VGFTPRDAYN MIYSDSAKHL DGTDSNSLIE  300
IFRRRQMDES DFYFEFELDE DARLCNFFWR DGQMKADYDL FGDLVVHDTT YRTNRYDMIC  360
APFVGMNHHC MNVMFGCGFL LNERIESFVW LFKVFVRSMG GKHPQTVMTD QCAAMAAGIA  420
QVFSNSNHRL CIWHIGENSK KHIKSLRNKK GFLELFNFLL KYIDTEAEFE FYWTRMMTEY  480
GCHKNVWLNK LYSIREKWCP AFSKEYFSGG ILSSQRSEST NHSIPRRLSK TAGLCDFYNS  540
FVSVVSEWRS RENGENVRCS QGLAPMVMNH VKLLSHARDI YTIEIYYLFE EQFLKGTSCH  600
QESVGGSGNE IKYHVWRPDV DLIRHEVYFK VNDLDISCSC MLFSEMGILC SHSLRIFNVH  660
CVAAIPDKYI IKRWTKKGIE DRIISSDSSL NILSIASSVW VIQMGRKFQQ LVLSSQANCK  720
AREVCENAFE DARRKVEGDI GPIVIEDGEE QIAGVIQNPA RNRAKGERNR RHISTIEKKY  780
NQVRGRKLGV KIAEMSTKAA VQASVEGVVA NIVGSGYFVH PSSGSHELGL VKSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	761	771	RNRAKGERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-89	FAR1 family protein