PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019166257.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

SBP

Protein Properties

Length: 340aa MW: 36686.6 Da PI: 9.1429

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019166257.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.1	4.4e-42	58	133	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+adlse k y+++hkvC +hsk+p+v+vsgleqrfCqqCsrfh+lsefD+ krsCrrrLa+hnerrrk+ XP_019166257.1 58 RCQVEGCKADLSEFKAYYSKHKVCGMHSKSPKVIVSGLEQRFCQQCSRFHQLSEFDQVKRSCRRRLAGHNERRRKP 133 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MELGSSSSST STSADSSSDG LKFGKKVYFE DAGGGSGGSS LPAKRGRSAV AQGGQPPRCQ 60 VEGCKADLSE FKAYYSKHKV CGMHSKSPKV IVSGLEQRFC QQCSRFHQLS EFDQVKRSCR 120 RRLAGHNERR RKPPLGSILS THYGTLSSSM FVTGNNGHFV MDFASYPYPG GKGSWRPSTN 180 GVGNFLQQPW QRNSEDPPPK LLLLGSDAAA RATYPSPCGE YFNGVSDSTR ALSLLSNSNQ 240 PWGSRNQQPS GLGVNSLLNT DGTLAVHPSG SHAAVINEFS SSPWGFKGNQ ATTSSDKILP 300 DSHYSGELEM MAHQQTGRAY MGMEYSTGYD SSVQNVHWTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57920.1	4e-60	SBP family protein