PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165861.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 514aa MW: 55330.4 Da PI: 5.972

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.2	2.6e-17	342	388	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L++l+P + Kl+Ka+iL +A+eY+ksLq XP_019165861.1 342 VHNLSERKRRDRINEKMRALQQLIPRC-----NKLDKASILDEAIEYLKSLQ 388 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MIAYDGMGVV KWEMEKLRVG GDDKPVIERV AKVTMNHHCA VPEFEMDEDY SPLPMIAPPS 60 AAGLSGGAKK SAMEDEIMEL LWQNGQVVVH TQNHQRSVKR SHGGDAAIPV PAAREVVGSA 120 EEEMATSHHQ PELFMQEDEM ASWLHYPLVD DSPYLSADLL YPSSSSAAAA VAPPRDFRAS 180 APEVRRPPAP LPPIPPSGRT DVLRSQNFAR LCRPPAGPSR AASTVVESND TPIVPSEYRD 240 SHVADSTAQV SGGNLGPRGG AMSGTEAAGA STGAKEMTVT SSPDDGSGAS VSAEKSTAPA 300 TAMDDRKAKG SETDDEGHNA DTDFGYNAKK QTSSKRSRAA EVHNLSERKR RDRINEKMRA 360 LQQLIPRCNK LDKASILDEA IEYLKSLQLQ VQMMSLGHGC GMIPMMFPGI QQYMPAMGIG 420 MGMNPPVAPY PMGGPRFPMP AFPMPTPFSM ADPSRIQALN HTDPMLNSPH NSSHPPFPTQ 480 TQVTPSMNEM AEHSNKSKPC SSKDVENPTT LQCG

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MIAYDGMGVV KWEMEKLRVG GDDKPVIERV AKVTMNHHCA VPEFEMDEDY SPLPMIAPPS  60
AAGLSGGAKK SAMEDEIMEL LWQNGQVVVH TQNHQRSVKR SHGGDAAIPV PAAREVVGSA  120
EEEMATSHHQ PELFMQEDEM ASWLHYPLVD DSPYLSADLL YPSSSSAAAA VAPPRDFRAS  180
APEVRRPPAP LPPIPPSGRT DVLRSQNFAR LCRPPAGPSR AASTVVESND TPIVPSEYRD  240
SHVADSTAQV SGGNLGPRGG AMSGTEAAGA STGAKEMTVT SSPDDGSGAS VSAEKSTAPA  300
TAMDDRKAKG SETDDEGHNA DTDFGYNAKK QTSSKRSRAA EVHNLSERKR RDRINEKMRA  360
LQQLIPRCNK LDKASILDEA IEYLKSLQLQ VQMMSLGHGC GMIPMMFPGI QQYMPAMGIG  420
MGMNPPVAPY PMGGPRFPMP AFPMPTPFSM ADPSRIQALN HTDPMLNSPH NSSHPPFPTQ  480
TQVTPSMNEM AEHSNKSKPC SSKDVENPTT LQCG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	352	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	1e-43	bHLH family protein