PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165852.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 515aa MW: 55443.5 Da PI: 5.972

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.2	2.6e-17	343	389	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L++l+P + Kl+Ka+iL +A+eY+ksLq XP_019165852.1 343 VHNLSERKRRDRINEKMRALQQLIPRC-----NKLDKASILDEAIEYLKSLQ 389 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MIAYDGMGVV KWEMEKLRVG GDDKPVIERV IAKVTMNHHC AVPEFEMDED YSPLPMIAPP 60 SAAGLSGGAK KSAMEDEIME LLWQNGQVVV HTQNHQRSVK RSHGGDAAIP VPAAREVVGS 120 AEEEMATSHH QPELFMQEDE MASWLHYPLV DDSPYLSADL LYPSSSSAAA AVAPPRDFRA 180 SAPEVRRPPA PLPPIPPSGR TDVLRSQNFA RLCRPPAGPS RAASTVVESN DTPIVPSEYR 240 DSHVADSTAQ VSGGNLGPRG GAMSGTEAAG ASTGAKEMTV TSSPDDGSGA SVSAEKSTAP 300 ATAMDDRKAK GSETDDEGHN ADTDFGYNAK KQTSSKRSRA AEVHNLSERK RRDRINEKMR 360 ALQQLIPRCN KLDKASILDE AIEYLKSLQL QVQMMSLGHG CGMIPMMFPG IQQYMPAMGI 420 GMGMNPPVAP YPMGGPRFPM PAFPMPTPFS MADPSRIQAL NHTDPMLNSP HNSSHPPFPT 480 QTQVTPSMNE MAEHSNKSKP CSSKDVENPT TLQCG

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MIAYDGMGVV KWEMEKLRVG GDDKPVIERV IAKVTMNHHC AVPEFEMDED YSPLPMIAPP  60
SAAGLSGGAK KSAMEDEIME LLWQNGQVVV HTQNHQRSVK RSHGGDAAIP VPAAREVVGS  120
AEEEMATSHH QPELFMQEDE MASWLHYPLV DDSPYLSADL LYPSSSSAAA AVAPPRDFRA  180
SAPEVRRPPA PLPPIPPSGR TDVLRSQNFA RLCRPPAGPS RAASTVVESN DTPIVPSEYR  240
DSHVADSTAQ VSGGNLGPRG GAMSGTEAAG ASTGAKEMTV TSSPDDGSGA SVSAEKSTAP  300
ATAMDDRKAK GSETDDEGHN ADTDFGYNAK KQTSSKRSRA AEVHNLSERK RRDRINEKMR  360
ALQQLIPRCN KLDKASILDE AIEYLKSLQL QVQMMSLGHG CGMIPMMFPG IQQYMPAMGI  420
GMGMNPPVAP YPMGGPRFPM PAFPMPTPFS MADPSRIQAL NHTDPMLNSP HNSSHPPFPT  480
QTQVTPSMNE MAEHSNKSKP CSSKDVENPT TLQCG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	353	ERKRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	1e-43	bHLH family protein