PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165721.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 616aa MW: 69609.7 Da PI: 9.3097

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165721.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.8	2.7e-21	30	117	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Yn YA++vGFsvrk +++++ +++i +++f C k g++++ ++ + ++ rtgC a ++ dg w vtk +eHnHel++ XP_019165721.1 30 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 117 7**************************************99887..888999********************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MVIICKLNVV IVDEDLVGVV VRNVDEAFEL YNGYAYRVGF SVRKGQQRYK ASTKSIQMKR 60 FFCAKAGYKQ KPNSGVKLYS KIDMRTGCGA FVQFDVGGDG MWTVTKHLKE HNHELCSFGK 120 SHLLRSHRRV GNNQLEYLKD MKSSGVALAD GMRFLKHQSG GSPLVGFTNR DAYNSMAFVS 180 LKCLDGSDSN SLVEIFRRRA FLRSMDGKCP QTIMTDQCSA MAAGISMVFP TSRHRLCIWH 240 IGENSKKHIK ALRNHKDFLD MFNCVLKYTE TEAEFEVYWT RMVTKYNCHK NTWLEKLYDC 300 REKWCPAFNK DYFSGGILSS QRSESTNHAI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG 360 EDFRCSQGVP AMMLDHVKLL SHAREYHVWR PDIDIIRHEV TFKAINLDIC CSCKLFSELG 420 ILCCHCLRIL HVHCVSSIPD KYILKRWTKK AVERTNVDIA SVFYNGGVPS SIWAVEISRK 480 FQRLIVSSQD NSVARQLCDE AVENARKNIE AEIGDVNTEE GAVSSSSGIV QDPSSRRGKG 540 VRNKRSSSVI EKKYNAARGR KSAANKLASI TKGSVQSLVL ENISEIARDG YLVHPSTGGS 600 QFVHFNKNVD HDVAID

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MVIICKLNVV IVDEDLVGVV VRNVDEAFEL YNGYAYRVGF SVRKGQQRYK ASTKSIQMKR  60
FFCAKAGYKQ KPNSGVKLYS KIDMRTGCGA FVQFDVGGDG MWTVTKHLKE HNHELCSFGK  120
SHLLRSHRRV GNNQLEYLKD MKSSGVALAD GMRFLKHQSG GSPLVGFTNR DAYNSMAFVS  180
LKCLDGSDSN SLVEIFRRRA FLRSMDGKCP QTIMTDQCSA MAAGISMVFP TSRHRLCIWH  240
IGENSKKHIK ALRNHKDFLD MFNCVLKYTE TEAEFEVYWT RMVTKYNCHK NTWLEKLYDC  300
REKWCPAFNK DYFSGGILSS QRSESTNHAI SRRLSKTAGL CDFYSSFVSV ISEWRSKENG  360
EDFRCSQGVP AMMLDHVKLL SHAREYHVWR PDIDIIRHEV TFKAINLDIC CSCKLFSELG  420
ILCCHCLRIL HVHCVSSIPD KYILKRWTKK AVERTNVDIA SVFYNGGVPS SIWAVEISRK  480
FQRLIVSSQD NSVARQLCDE AVENARKNIE AEIGDVNTEE GAVSSSSGIV QDPSSRRGKG  540
VRNKRSSSVI EKKYNAARGR KSAANKLASI TKGSVQSLVL ENISEIARDG YLVHPSTGGS  600
QFVHFNKNVD HDVAID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	2e-38	FAR1 family protein