PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165383.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 339aa MW: 37917 Da PI: 6.3564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.7e-10	59	108	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL+ +++ +k+L XP_019165383.1 59 RKVQKADREKLRRDRLNEQFTELGNTLDPD----RPKNDKASILTDTIQMVKDL 108 5677889******************997....79*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence
MDRSNHDAGA FYQSINAPST SLPEFTQHPL PDISLHRLPP DCSAKDRPEA ELRDSIAARK 60 VQKADREKLR RDRLNEQFTE LGNTLDPDRP KNDKASILTD TIQMVKDLSD QVSRLKSEYA 120 ALTDECRELT QEKNDLREEK SSIKSDIESL NAQYQQRLRT MYPWAGMDHP LVMHPPSYPY 180 PVPVPIPTGP IPMHPSMQAY PFFGNQNPAV IPNPCSTFVP YMTPTTIIEQ PSTHVSPAVQ 240 PSSRTHGLSK QDSRHKSDQE ESRIERSEGS NEVATDLELK TPGSTSEQEL SSGQRRAKKR 300 TMENNSLTDG SSSSRCSSSH SVQAFSSNSV VGDSKKDEK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	295	301	RRAKKRT
2	295	339	RRAKKRTMENNSLTDGSSSSRCSSSHSVQAFSSNSVVGDSKKDEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	9e-77	bHLH family protein