PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165354.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 357aa MW: 39807.8 Da PI: 8.7179

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.9	1e-14	15	102	5	98
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++++v+ + +l++p f+e++g+ s +++l+ +g +W v l +k ++r+++t+GW++F + + g f+ F + ++ +f v++f+ XP_019165354.1 15 IITPSVFDQPQLRIPDGFVERYGHR--LSGEVKLTVHTGDEWCVSL--KKVGKRVLFTDGWRKFMEYYSIGIGYFLFFIYRKSCCF--DVHLFD 102 578999**************966..8889***********..*****************************9988999..777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MPTLPCSSSP CFYRIITPSV FDQPQLRIPD GFVERYGHRL SGEVKLTVHT GDEWCVSLKK 60 VGKRVLFTDG WRKFMEYYSI GIGYFLFFIY RKSCCFDVHL FDMTATEIWD LPSTNANAER 120 STHISQDLQF TKEKCVGISD CGGSDDGNRT VKQLDDLKCN QVHENLADLS GLGSGCKRQR 180 AATRWVNVQS SYRTRGKGKM FGEEGSISGA ENVPDDGYSN KPVFAKSLLG SESRHNNDSA 240 GLIVENANNQ QISGKKGTLV SDDGKSNSAD RLSPIFPNCK TDSEGSNIKQ EKKRRSVSSK 300 RSSKHIMQRQ ATAQEKERAS RDAKMLAPNN PYFTVSLKEY NITSSCILSI LVNESNV

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MPTLPCSSSP CFYRIITPSV FDQPQLRIPD GFVERYGHRL SGEVKLTVHT GDEWCVSLKK  60
VGKRVLFTDG WRKFMEYYSI GIGYFLFFIY RKSCCFDVHL FDMTATEIWD LPSTNANAER  120
STHISQDLQF TKEKCVGISD CGGSDDGNRT VKQLDDLKCN QVHENLADLS GLGSGCKRQR  180
AATRWVNVQS SYRTRGKGKM FGEEGSISGA ENVPDDGYSN KPVFAKSLLG SESRHNNDSA  240
GLIVENANNQ QISGKKGTLV SDDGKSNSAD RLSPIFPNCK TDSEGSNIKQ EKKRRSVSSK  300
RSSKHIMQRQ ATAQEKERAS RDAKMLAPNN PYFTVSLKEY NITSSCILSI LVNESNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-21	B3 family protein