PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164895.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 321aa MW: 34176.2 Da PI: 8.6809

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164895.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.1	1.6e-38	45	203	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+ +++++hTkv+gR+RR+R++a+ aar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s++ XP_019164895.1 45 PAKRASTKDRHTKVDGRGRRIRMPATAAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISVRSSGSTMSASshlrnin 139 6899*****************************************************************99975556666655444434556666 PP TCP 89 ...............................kaaksaakskksqksaasalnlakesrakarar 121 +aa+ a + ++s++ n+a +ak+ a XP_019164895.1 140 syfhgysqlrlmeesqrrimlglsseyspaaAAAALALNFGYGNHSSSDEVNVATMLQAKQEAA 203 6666666666666666666666666665553222222244444555555555555555555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MEAENNGGRL NFPLQLLEKT EDMSTAIIPA PQVVNQLQDL SKKAPAKRAS TKDRHTKVDG 60 RGRRIRMPAT AAARVFQLTK ELGHKSDGET IEWLLQQAEP SVIAATGTGT IPANFTSLNI 120 SVRSSGSTMS ASSHLRNINS YFHGYSQLRL MEESQRRIML GLSSEYSPAA AAAALALNFG 180 YGNHSSSDEV NVATMLQAKQ EAAAGDRHHT PALHNYMSGP GSYMLQSSSG CIPASQGQIP 240 ATTTLYRMGN NHPSTSGHDP CLWANNAHAT NPNNGGGLHL MNFPTPVVAV SNAGGTVAEG 300 QPTGMFAATL NGFRSSMDDS R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-52	TCP family protein