PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164716.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 520aa MW: 56120.9 Da PI: 7.1258

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.3	7.5e-34	245	301	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers +++++ei+Y+g+Hnh+ XP_019164716.1 245 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPKCPVKKKVERSL-EGQITEIIYKGQHNHP 301 8**************************************.*************8 PP
2	WRKY	107.3	7.4e-34	411	469	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k++er+a+dpk+v++tYeg+Hnh+ XP_019164716.1 411 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSPGCNVRKHIERAANDPKAVITTYEGKHNHD 469 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MAKNDGGSSS SAASRSAPER PTITLPPRSS VESLFTGGFM SGISPGPMTL VSNFFSEGDS 60 YSECPSFSQL LAGAIASPVA LGGVRPPPPL QPVEAKEESG TGSGGDADFR LKHNRPAGLA 120 ITQQSMFTIP PGLSPATLLD SPGFSLLFSP GQGPFGMSHQ QALAQVTTQA AQAQVQMHIQ 180 PDYPSSSAAP ATSYSQLQTI ASNATINQQV PSQASGHNIM KESSEVSHSD QRIEPASFPV 240 DKPADDGYNW RKYGQKHVKG SEFPRSYYKC THPKCPVKKK VERSLEGQIT EIIYKGQHNH 300 PPPQNRKGAK DPGNSNGPLQ CGSELSSEGL TTNFNKPKDQ ESSQATHEHV SGSSESEEVG 360 DAETRADGGG DDERESKRRA IEMPVPDPAT SHRTVTEPRI IVQTTSEVDL LDDGYRWRKY 420 GQKVVKGNPY PRSYYKCTSP GCNVRKHIER AANDPKAVIT TYEGKHNHDV PAARNSSHNT 480 SNNNTMPHNV AGQQLAAIRT DYSSNEQQVA LLRFKEEQIT

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MAKNDGGSSS SAASRSAPER PTITLPPRSS VESLFTGGFM SGISPGPMTL VSNFFSEGDS  60
YSECPSFSQL LAGAIASPVA LGGVRPPPPL QPVEAKEESG TGSGGDADFR LKHNRPAGLA  120
ITQQSMFTIP PGLSPATLLD SPGFSLLFSP GQGPFGMSHQ QALAQVTTQA AQAQVQMHIQ  180
PDYPSSSAAP ATSYSQLQTI ASNATINQQV PSQASGHNIM KESSEVSHSD QRIEPASFPV  240
DKPADDGYNW RKYGQKHVKG SEFPRSYYKC THPKCPVKKK VERSLEGQIT EIIYKGQHNH  300
PPPQNRKGAK DPGNSNGPLQ CGSELSSEGL TTNFNKPKDQ ESSQATHEHV SGSSESEEVG  360
DAETRADGGG DDERESKRRA IEMPVPDPAT SHRTVTEPRI IVQTTSEVDL LDDGYRWRKY  420
GQKVVKGNPY PRSYYKCTSP GCNVRKHIER AANDPKAVIT TYEGKHNHDV PAARNSSHNT  480
SNNNTMPHNV AGQQLAAIRT DYSSNEQQVA LLRFKEEQIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-150	WRKY family protein