PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164658.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 263aa    MW: 29507 Da    PI: 6.3866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-09154201455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er+RR++iN+++  L+ l+P +     k +  a +L   ++YI+sLq
  XP_019164658.1 154 SHSLAERQRREKINEKLKCLQGLVPGC----YKTMGMAVMLDVIINYIRSLQ 201
                     8*************************9....356999**************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MAEFNIGDFL NLNTPLPDNL NYSNDQHGIM RFSNDGFDHQ ENHQSALQLT MMTFNNEIQI  60
PSYDDHHHHH HHHPAPDDSS PQFFSMEAGA TSHGCTTDNI NPLSEPEGLV GRQAYPIKNC  120
GRKKRKRNND IGEGDGKPKE VVHVRAKRGQ ATDSHSLAER QRREKINEKL KCLQGLVPGC  180
YKTMGMAVML DVIINYIRSL QNQIDFLSMK LSVASLFYDF NSSDVDAVDM AQGANLYEAQ  240
GMGKAMAEGY GGFPPQFQTS WPL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127RKKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.11e-60bHLH family protein