PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164630.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 393aa    MW: 45158.5 Da    PI: 4.6675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-08650244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       WT +E+ ++  a   +  g   +Wk+Ia+ +  g+++k++ +++
   XP_019164630.1  6 ATWTWDEERIFESALLTYVEGtpkRWKKIAKLIS-GKSAKDVEEHY 50
                     57****************99999***********.**********8 PP
2Myb_DNA-binding25.72.6e-08101145244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                        WT +E+ ++  a   +  g   +Wk+Ia+ +  g+++k++ +++
   XP_019164630.1 101 ATWTWDEERIFESALLTYVEGtpkRWKKIAKLIS-GKSAKDVEEHY 145
                      57****************99999***********.**********8 PP
3Myb_DNA-binding25.72.6e-08196240244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                        WT +E+ ++  a   +  g   +Wk+Ia+ +  g+++k++ +++
   XP_019164630.1 196 ATWTWDEERIFESALLTYVEGtpkRWKKIAKLIS-GKSAKDVEEHY 240
                      57****************99999***********.**********8 PP
4Myb_DNA-binding25.72.6e-08291335244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                        WT +E+ ++  a   +  g   +Wk+Ia+ +  g+++k++ +++
   XP_019164630.1 291 ATWTWDEERIFESALLTYVEGtpkRWKKIAKLIS-GKSAKDVEEHY 335
                      57****************99999***********.**********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    
MANQRATWTW DEERIFESAL LTYVEGTPKR WKKIAKLISG KSAKDVEEHY PILLAKIEAM  60
ESNITQLQTN TNDASSSQRR EEKEVGSVWD LDELVSCSER ATWTWDEERI FESALLTYVE  120
GTPKRWKKIA KLISGKSAKD VEEHYPILLA KIEAMESNIT QLQTNTNDAS SSQRREEKEV  180
GSVWDLDELV SCSERATWTW DEERIFESAL LTYVEGTPKR WKKIAKLISG KSAKDVEEHY  240
PILLAKIEAM ESNITQLQTN TNDASSSQRR EEKEVGSVWD LDELVSCSER ATWTWDEERI  300
FESALLTYVE GTPKRWKKIA KLISGKSAKD VEEHYPILLA KIEAMESNIT QLQTNTNDAS  360
SSQRREEKEV GSVWDLDELV SCSEVYHALN KYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-11MYB_related family protein