PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164619.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 271aa    MW: 30969 Da    PI: 9.2329
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.21.5e-1936135291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkek.dgkwevtkleleH 85 
                     +Y +YA++vGF+vr s+ k++ r +ei++r +vC+++g +   +            +++e+r+r ++r++Cka++  kk+k +g+++vt +e+eH
  XP_019164619.1  36 CYMSYARTVGFDVRCSSVKRN-RAEEIYSRYLVCNRQGIKGGGRLPsvhdrvvnagDNREHRRRLSNRVNCKARIGFKKKKsTGEFVVTVFEEEH 129
                     79***************9999.6667************9988776678899****999999*******************99************* PP

            FAR1  86 nHelap 91 
                     +H+l++
  XP_019164619.1 130 THKLCT 135
                     ****95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    
METSLTEDQE RTPPMDASLI PAAGRVFKTL NEGIHCYMSY ARTVGFDVRC SSVKRNRAEE  60
IYSRYLVCNR QGIKGGGRLP SVHDRVVNAG DNREHRRRLS NRVNCKARIG FKKKKSTGEF  120
VVTVFEEEHT HKLCTESSKV FMRINRRLNV AQQAFLGNCV KANIGASTGL RFCKETTGSY  180
ANVGATDVEF HNFKRDVQTY VDVADGEMII ATFKAKQEMC RDFFFDYHLD EENRLSRLFW  240
ADPRGRRNFS CYGDNISFDA TYGTNRYAVA I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196115RRRLSNRVNCKARIGFKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-16FAR1 family protein