PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164461.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 921aa MW: 105754 Da PI: 9.0279

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.6	8.5e-18	288	384	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Yn+YA +vGF++r s+ + r+g+ t ++ vC++eg++++ ++ + +r + +++rtgC+a++ k + ++vt++ ++HnH XP_019164461.1 288 YNNYAAKVGFDTRSSSLVRA-RDGTKTLKQIVCNREGFKNTGAQHchskstadagEGPSRPKLVSNRTGCRARIIFKYIGVAGYQVTTFIEKHNH 381 **************9998.7888999********99999999999998888888899****************************** PP FAR1 88 ela 90 +++ XP_019164461.1 382 SMS 384 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 921 aa Download sequence
MAGATHPVTQ TQINVPILNE DNHKEWKDAI LRQLRLLELD YVVLNEEPPE VTEESTGEAK 60 QLRARWEKSN RLCVVFIKSR ISTKIRFCFE DIKKAKHFLK AIDDNFIESK KVLAMTLIMK 120 LRNLRLSTVK GTREHIMQLR DIAAQLKELE IILPDDYLVL FALDTLPQEY NPFKISYITH 180 KEDWSINELI TMCAMEEQRL VAKLGLFVKR NRKPSNNVNR SRMEELDQVP SDFQSTNNPS 240 LSPSSSSNGY TLTISPRMTQ YWTLHCEDEI KPAVDMIFKT LDAGIESYNN YAAKVGFDTR 300 SSSLVRARDG TKTLKQIVCN REGFKNTGAQ HCHSKSTADA GEGPSRPKLV SNRTGCRARI 360 IFKYIGVAGY QVTTFIEKHN HSMSSVLARQ FLKGNRNISS VHQKFILDCA KANIRASKSH 420 GLYSQIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILV HNLIKRQEMC PAFAFDYEVD 480 EDEQMSRLFW ADPMSKKNFA AFGDVVSFDA TYSTNRYDMA MGMEPRIIVI DQDPAMKVAI 540 PRVFKQARHR YCMWHIMCKV GEKVGPTLNK NEEFKNKLNS IVWTSSLEPP DFEKQWRELM 600 EKYNLVEHNW FITMFEARNH GIPAYFRDDF MGDLLRTMSR SESENYTYSR FTCPQSSLVE 660 FMMNFDSALK SQRNTNAKLN SDNEGYNPDM KMPLGIEKHA SIVYTITVFY QVQEEICASC 720 FKCMVLSVRE DGGMLHYDIM DGKNKIFTMV HNVNDHEAKC SCKMFEMVGL LCRHIFMVFK 780 NLEKIPLKYV VNRWTKDASL KATSEIDGSN MEQLAAFLQV INEQKQLLMS GKEKLSPQHS 840 RKTVIESFCG STEISEINIL PPKHAKNKGI GKRIKSSKEL AMEKEKGRRC NFCGVRGDQH 900 DTRTCPLNPK NKDKQKGKKK A

Sequence ? help Back to Top

Protein Sequence Length: 921 aa Download sequence

MAGATHPVTQ TQINVPILNE DNHKEWKDAI LRQLRLLELD YVVLNEEPPE VTEESTGEAK  60
QLRARWEKSN RLCVVFIKSR ISTKIRFCFE DIKKAKHFLK AIDDNFIESK KVLAMTLIMK  120
LRNLRLSTVK GTREHIMQLR DIAAQLKELE IILPDDYLVL FALDTLPQEY NPFKISYITH  180
KEDWSINELI TMCAMEEQRL VAKLGLFVKR NRKPSNNVNR SRMEELDQVP SDFQSTNNPS  240
LSPSSSSNGY TLTISPRMTQ YWTLHCEDEI KPAVDMIFKT LDAGIESYNN YAAKVGFDTR  300
SSSLVRARDG TKTLKQIVCN REGFKNTGAQ HCHSKSTADA GEGPSRPKLV SNRTGCRARI  360
IFKYIGVAGY QVTTFIEKHN HSMSSVLARQ FLKGNRNISS VHQKFILDCA KANIRASKSH  420
GLYSQIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILV HNLIKRQEMC PAFAFDYEVD  480
EDEQMSRLFW ADPMSKKNFA AFGDVVSFDA TYSTNRYDMA MGMEPRIIVI DQDPAMKVAI  540
PRVFKQARHR YCMWHIMCKV GEKVGPTLNK NEEFKNKLNS IVWTSSLEPP DFEKQWRELM  600
EKYNLVEHNW FITMFEARNH GIPAYFRDDF MGDLLRTMSR SESENYTYSR FTCPQSSLVE  660
FMMNFDSALK SQRNTNAKLN SDNEGYNPDM KMPLGIEKHA SIVYTITVFY QVQEEICASC  720
FKCMVLSVRE DGGMLHYDIM DGKNKIFTMV HNVNDHEAKC SCKMFEMVGL LCRHIFMVFK  780
NLEKIPLKYV VNRWTKDASL KATSEIDGSN MEQLAAFLQV INEQKQLLMS GKEKLSPQHS  840
RKTVIESFCG STEISEINIL PPKHAKNKGI GKRIKSSKEL AMEKEKGRRC NFCGVRGDQH  900
DTRTCPLNPK NKDKQKGKKK A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-74	FAR1 family protein