PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019164370.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 306aa    MW: 34273.3 Da    PI: 7.9428
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019164370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.58.4e-2266153291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      Yn YA++vGFsvrk +++++  +++i +++f C k g++++ ++    +  ++   rtgC a ++     dg w vtk  +eHnHel++
  XP_019164370.1  66 LYNGYAYRVGFSVRKGQQRYKASTKSIQMKRFFCAKAGYKQKPNSG--VKLYSKIDMRTGCGAFVQFDVGGDGMWTVTKHLKEHNHELCS 153
                     7****************************************99887..888999**********************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MEETTVRGED STDMISAIPV NEDCVGDSIS NDQAELNIDI DGSSSSPVDE DLVGVVVRNV  60
DEAFELYNGY AYRVGFSVRK GQQRYKASTK SIQMKRFFCA KAGYKQKPNS GVKLYSKIDM  120
RTGCGAFVQF DVGGDGMWTV TKHLKEHNHE LCSFGKSHLL RSHRRVGNNQ LEYLKDMKSS  180
GVALADGMRF LKHQSGGSPL VGFTNRDAYN SMASVSLKCL DGSDSNSLIE IFRRRQSNEA  240
DFFFDFELWE NAKFCSRDAR MRNARTRNAR AERNGCGAEC LRVIEGNGCG RRSERRELES  300
GVQRAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-19FAR1 family protein