PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164305.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 359aa MW: 41051.7 Da PI: 8.9503

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.9e-20	29	129	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA +vGF++r s+ + r+g+ t+++ C++eg++++ ++ ++ +r+r+++rtgC+a++ k + ++vt++ + XP_019164305.1 29 EFYNHYAAKVGFDTRSSSVVTA-RDGTKTQKQIICNREGFKNTGAQHchsqssadagegPSRPKRRRVSNRTGCRARIIFKYIGAAGYQVTTFIE 122 6************9998887.8888************999999***999899999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019164305.1 123 KHNHSMS 129 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MTQYWTPHCE DEIKPAVDMI FKTLDAGIEF YNHYAAKVGF DTRSSSVVTA RDGTKTQKQI 60 ICNREGFKNT GAQHCHSQSS ADAGEGPSRP KRRRVSNRTG CRARIIFKYI GAAGYQVTTF 120 IEKHNHSMSS VLARQFLKGN KNISSVHQKF ILDCAKANIG ASKSHGLYSY IVGDYSEVGA 180 TVVDFKNVRR DLRAYILGAD AQILVHNLIK KEEMCPAFAF DYEVDEDDQM SRLFWADPMS 240 KKNFAAFGDV VSFDATYSTN RYNLAMGIEP RIIFTDQDPA MKVAIPTVFK QVRHRYCMWH 300 IMCKVGEKVG PTLNKDEEFR NKLNSIVWTS SLEPLDFEKQ WRELMEKYNS RTQLVYNYV

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MTQYWTPHCE DEIKPAVDMI FKTLDAGIEF YNHYAAKVGF DTRSSSVVTA RDGTKTQKQI  60
ICNREGFKNT GAQHCHSQSS ADAGEGPSRP KRRRVSNRTG CRARIIFKYI GAAGYQVTTF  120
IEKHNHSMSS VLARQFLKGN KNISSVHQKF ILDCAKANIG ASKSHGLYSY IVGDYSEVGA  180
TVVDFKNVRR DLRAYILGAD AQILVHNLIK KEEMCPAFAF DYEVDEDDQM SRLFWADPMS  240
KKNFAAFGDV VSFDATYSTN RYNLAMGIEP RIIFTDQDPA MKVAIPTVFK QVRHRYCMWH  300
IMCKVGEKVG PTLNKDEEFR NKLNSIVWTS SLEPLDFEKQ WRELMEKYNS RTQLVYNYV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	91	95	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-44	FAR1 family protein