PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164258.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-other

Protein Properties

Length: 961aa MW: 107180 Da PI: 8.6841

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164258.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.6	6.8e-06	65	121	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g+t +qV+ +F +R++ +k XP_019164258.1 65 KRPRDLLNPKAVKYMQSVFSIKDVISKKETREISALFGVTVTQVRDFFTTQRTRVRK 121 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 961 aa Download sequence
MENQLQLVVS SPATSFLDLL ASQRELFRSQ VDHLENIVVT QCKLTGVNPL SQEMAAGALS 60 IKIGKRPRDL LNPKAVKYMQ SVFSIKDVIS KKETREISAL FGVTVTQVRD FFTTQRTRVR 120 KLVRLSREKA RTSSASDEPC GGIPLSSDAS LPVDPVPLDS VAPTNVEAPS CSTQDEALSG 180 VEESDKDFID NIFILMRQEE TFSGQVKLMD WILEIQNPSV LQWFLSKGGV MILATWLSQA 240 ATEEQTSVLH HILKVLCHLP LHKALPAHMS AILQSVNKLR FYRTPDISNR ARILLFRWSK 300 KLANQSSKKP NGLKSASDAH DEMLLKHSIG EVMAEVDGFE ESLSQFDTSE NLRKLGSTQP 360 LKLLTSSVEE SNKKTGRGAL SAQTRERRKV QLVEQPGQRM PGRNPQVART ASATQGRPLS 420 ADDIQKAKLR AQFLQSKYGK SKTSTDHSPQ PKPEGPNKNA APQDGIFHST TKTHDLPTIN 480 EEKSKINEVK PTIDVEKPAI DEEKPKFDQQ KKIADIKSNI SNQHETPLNQ KRSLDAEEPP 540 PGKKCKAIQI PWRTPPEMVI SEKWKICTGG NSKEVEVQKN RIHRERETIY RTLHEIPLNP 600 KEPWDREMDY DDTLTPQIPI EQLPDGDGVE TMVSQAENVE TIAAPSASSL PQNVNSSMPE 660 PDLELLAVLL KNPELVFALT SGQAGNLSSE DTVKLLDMIK ANGLKSMSDP NGLGRRAEDK 720 VEVSLPSPTP SSNPGTSGLK SDEYDKNPFS RRDATVTPAQ QPHYPAMAAQ QLLTPQFAQQ 780 REAAAMLQAT GRNFHEHHQH PPVISSLNQA APPPNSMNAS ELLVNRNGAV FKPSSLNPPQ 840 APAMPSHRVQ TQPQQAYYVP EPLPPQNWGA RQGPPTNSNN YNHPHVGATT QPGPWRRNDY 900 GFESFSPENS PARSHEYAPR WNHSEPRMNN NYPTERMTSR NPSTYHDPNW NVNRRWSDRR 960 R

Sequence ? help Back to Top

Protein Sequence Length: 961 aa Download sequence

MENQLQLVVS SPATSFLDLL ASQRELFRSQ VDHLENIVVT QCKLTGVNPL SQEMAAGALS  60
IKIGKRPRDL LNPKAVKYMQ SVFSIKDVIS KKETREISAL FGVTVTQVRD FFTTQRTRVR  120
KLVRLSREKA RTSSASDEPC GGIPLSSDAS LPVDPVPLDS VAPTNVEAPS CSTQDEALSG  180
VEESDKDFID NIFILMRQEE TFSGQVKLMD WILEIQNPSV LQWFLSKGGV MILATWLSQA  240
ATEEQTSVLH HILKVLCHLP LHKALPAHMS AILQSVNKLR FYRTPDISNR ARILLFRWSK  300
KLANQSSKKP NGLKSASDAH DEMLLKHSIG EVMAEVDGFE ESLSQFDTSE NLRKLGSTQP  360
LKLLTSSVEE SNKKTGRGAL SAQTRERRKV QLVEQPGQRM PGRNPQVART ASATQGRPLS  420
ADDIQKAKLR AQFLQSKYGK SKTSTDHSPQ PKPEGPNKNA APQDGIFHST TKTHDLPTIN  480
EEKSKINEVK PTIDVEKPAI DEEKPKFDQQ KKIADIKSNI SNQHETPLNQ KRSLDAEEPP  540
PGKKCKAIQI PWRTPPEMVI SEKWKICTGG NSKEVEVQKN RIHRERETIY RTLHEIPLNP  600
KEPWDREMDY DDTLTPQIPI EQLPDGDGVE TMVSQAENVE TIAAPSASSL PQNVNSSMPE  660
PDLELLAVLL KNPELVFALT SGQAGNLSSE DTVKLLDMIK ANGLKSMSDP NGLGRRAEDK  720
VEVSLPSPTP SSNPGTSGLK SDEYDKNPFS RRDATVTPAQ QPHYPAMAAQ QLLTPQFAQQ  780
REAAAMLQAT GRNFHEHHQH PPVISSLNQA APPPNSMNAS ELLVNRNGAV FKPSSLNPPQ  840
APAMPSHRVQ TQPQQAYYVP EPLPPQNWGA RQGPPTNSNN YNHPHVGATT QPGPWRRNDY  900
GFESFSPENS PARSHEYAPR WNHSEPRMNN NYPTERMTSR NPSTYHDPNW NVNRRWSDRR  960
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-163	HB-other family protein