PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164233.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 811aa MW: 88857.2 Da PI: 5.5691

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00037	609	646	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a K s + Le+A++++ Lq XP_019164233.1 609 RQMIQDRLKELREIVPNgA------KCSIDSLLERAIKHMLFLQ 646 77899**********77......777778*******9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence
MGYLLKQALK TLCGVNRWSY AVFWKIGCQN PKLLIWEECY YEPPEVSSSK LAFNNWGACW 60 ASDEVLNSRP VQAGEGVQAL VNKMMMENQF KVVGEGLAGR AAVTGHHHWI LSQGNSREAY 120 PLEVLKELSQ QFSAGIETIA VIPVLPHGVV QLGSYNVVME NMVFVNNVRM AICELGCIPG 180 VLLSGEDAMR EPGVPIHVGN SICEDFVGGS KVLDSVPIAY RNSETNLVLS EMHVGHQTCS 240 SFVRQNTGDL CSSDATFGDA RYSPSFVEYH DDDHCQSKAR PNFPPSNPNH WSNQHAYFYV 300 PGPPSRQQSP FESMMVPDRI ENSVVPPSVG ANQVCNGVEM HPKSSPVLDS SSSGAVNDLL 360 LATHPSSAGF ELDGIRGMEE NDLFQALGIH NENLSSSPPK CIPDFSYDVK HEYDNTFFQD 420 HSGDDLFDIL GADFKNKLLN GNWNDFQSSG QDTITMDMSK NPSTSMISKD ASSTVNQGKS 480 VDHLFDSLAA KKSVDDNVSC WTTVTNMSSS SGPTASGSYG QVSMPVEIHG GLVGFPRSLT 540 DSAIMGSCSF GSESSKETAG AFLHSSSIYG SQMSTSVSTA QSKKHDETSK TSRKRLKPGE 600 NPRPRPKDRQ MIQDRLKELR EIVPNGAKCS IDSLLERAIK HMLFLQSIAK HADKLKQIGE 660 LKIISTDGGL CLKDNFDGGA TWAYEVGSQS MVCPIIIEDL NQPRQMLVKM LCEERGLFLE 720 IADVIRGLGL TILIGVIETR NQKIWARFAV EANRDVTRME IFVSLVRLLE QTTATNGAEP 780 SNANEIEPVK DHQFNHGAPI PTTTGQARML Q

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence

MGYLLKQALK TLCGVNRWSY AVFWKIGCQN PKLLIWEECY YEPPEVSSSK LAFNNWGACW  60
ASDEVLNSRP VQAGEGVQAL VNKMMMENQF KVVGEGLAGR AAVTGHHHWI LSQGNSREAY  120
PLEVLKELSQ QFSAGIETIA VIPVLPHGVV QLGSYNVVME NMVFVNNVRM AICELGCIPG  180
VLLSGEDAMR EPGVPIHVGN SICEDFVGGS KVLDSVPIAY RNSETNLVLS EMHVGHQTCS  240
SFVRQNTGDL CSSDATFGDA RYSPSFVEYH DDDHCQSKAR PNFPPSNPNH WSNQHAYFYV  300
PGPPSRQQSP FESMMVPDRI ENSVVPPSVG ANQVCNGVEM HPKSSPVLDS SSSGAVNDLL  360
LATHPSSAGF ELDGIRGMEE NDLFQALGIH NENLSSSPPK CIPDFSYDVK HEYDNTFFQD  420
HSGDDLFDIL GADFKNKLLN GNWNDFQSSG QDTITMDMSK NPSTSMISKD ASSTVNQGKS  480
VDHLFDSLAA KKSVDDNVSC WTTVTNMSSS SGPTASGSYG QVSMPVEIHG GLVGFPRSLT  540
DSAIMGSCSF GSESSKETAG AFLHSSSIYG SQMSTSVSTA QSKKHDETSK TSRKRLKPGE  600
NPRPRPKDRQ MIQDRLKELR EIVPNGAKCS IDSLLERAIK HMLFLQSIAK HADKLKQIGE  660
LKIISTDGGL CLKDNFDGGA TWAYEVGSQS MVCPIIIEDL NQPRQMLVKM LCEERGLFLE  720
IADVIRGLGL TILIGVIETR NQKIWARFAV EANRDVTRME IFVSLVRLLE QTTATNGAEP  780
SNANEIEPVK DHQFNHGAPI PTTTGQARML Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	3e-52	bHLH family protein