PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019164009.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HB-other

Protein Properties

Length: 522aa MW: 58669.7 Da PI: 7.4238

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019164009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.4e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kRt t+ q+e+Le+++ +++yp++ ++ +LA++lgLte+q++ WF+ rR k+k+ XP_019164009.1 20 KKRTIKTRAQVEALEKFYDEHKYPTELMKSQLAESLGLTEKQISGWFCHRRLKDKR 75 8*****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MEDSGEMNSG DDNTLSDKNK KRTIKTRAQV EALEKFYDEH KYPTELMKSQ LAESLGLTEK 60 QISGWFCHRR LKDKRLFNGE VYLNGKQDRS SGVIQDRGSG LRQDSCGSTK QGDDRTSDPR 120 EVESRRLTGV EFSTPDLTHE FGGHSTRNYN CMDDTSLGST SSLRNTYFPH NADSFDEGTS 180 RYLTNSCPTD QKTVKPRTGP SGYLKVKGHV ENSAITAVKR QLGRQYHEDG PPLGVEFEPL 240 PPGAFESPMQ NHTNNSYRAG ERDVARSEDF PKAHKQSNSS TGYGYYSKIS SHNLDMLSEK 300 LKRPHGTDHS EKCFNQKLRQ KSFLPVPEYS ASVRNSPGDK DEVPAREMLF NSRDNHQLMA 360 KYGGEMRMDS VANQGLLSPN SGRMTNEQAE PRLKRNYEAN LKVSQVEHFE CKPSTIRNRV 420 GIYHDVREKG ISKSLKKDDL FCGDGAILDE SCNQGQLKIP RKYETTDGKR TSNHMSNSRE 480 FARNASLTGM PLQTNQGIRS AAEMPSSFSE DDVTTETSSS EE

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MEDSGEMNSG DDNTLSDKNK KRTIKTRAQV EALEKFYDEH KYPTELMKSQ LAESLGLTEK  60
QISGWFCHRR LKDKRLFNGE VYLNGKQDRS SGVIQDRGSG LRQDSCGSTK QGDDRTSDPR  120
EVESRRLTGV EFSTPDLTHE FGGHSTRNYN CMDDTSLGST SSLRNTYFPH NADSFDEGTS  180
RYLTNSCPTD QKTVKPRTGP SGYLKVKGHV ENSAITAVKR QLGRQYHEDG PPLGVEFEPL  240
PPGAFESPMQ NHTNNSYRAG ERDVARSEDF PKAHKQSNSS TGYGYYSKIS SHNLDMLSEK  300
LKRPHGTDHS EKCFNQKLRQ KSFLPVPEYS ASVRNSPGDK DEVPAREMLF NSRDNHQLMA  360
KYGGEMRMDS VANQGLLSPN SGRMTNEQAE PRLKRNYEAN LKVSQVEHFE CKPSTIRNRV  420
GIYHDVREKG ISKSLKKDDL FCGDGAILDE SCNQGQLKIP RKYETTDGKR TSNHMSNSRE  480
FARNASLTGM PLQTNQGIRS AAEMPSSFSE DDVTTETSSS EE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	5e-71	HB-other family protein