PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163836.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 280aa MW: 30116.5 Da PI: 8.9845

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.1	7.5e-12	10	53	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT e+d+ + +a + ++ + +W++Ia+ ++ g++lk++k+++ XP_019163836.1 10 VWTRELDKAFEKALATYPEDlsdRWEKIAADVP-GKSLKEVKLHY 53 7******************************.********9 PP
2	Myb_DNA-binding	43.9	5.4e-14	118	162	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky XP_019163836.1 118 AWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 162 6*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MTVTESSSSV WTRELDKAFE KALATYPEDL SDRWEKIAAD VPGKSLKEVK LHYEILMDDV 60 SRIESGCVPL PYCDSSTDSL TSHEEGNGKK GGNSGQGNND SHNGKSTRSD QERRKGIAWT 120 EEEHRLFLLG LDKYGKGDWR SISRNFVVTR TPTQVASHAQ KYFIRLNSMN KDRRRSSIHD 180 ITSVNSGDVS TPQGPITGQT NGTTAAGSSS GKSNKQPAAH PGVGVYGPTT IGQPVGGPLV 240 SAVGTPVNLP PPAHMAYGVR PPIPGQALPG VPGTYPMPHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-103	MYB family protein