PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019163833.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 318aa    MW: 34546 Da    PI: 8.5859
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019163833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.1e-124891344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT e+d+ + +a + ++ +   +W++Ia+ ++ g++lk++k+++
   XP_019163833.1 48 VWTRELDKAFEKALATYPEDlsdRWEKIAADVP-GKSLKEVKLHY 91
                     7********************************.**********9 PP
2Myb_DNA-binding43.76.5e-14156200347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_019163833.1 156 AWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 200
                      6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MPMAITFKIC YSKCLLLEFI FDNLDLLLIL QSKLREGLMT VTESSSSVWT RELDKAFEKA  60
LATYPEDLSD RWEKIAADVP GKSLKEVKLH YEILMDDVSR IESGCVPLPY CDSSTDSLTS  120
HEEGNGKKGG NSGQGNNDSH NGKSTRSDQE RRKGIAWTEE EHRLFLLGLD KYGKGDWRSI  180
SRNFVVTRTP TQVASHAQKY FIRLNSMNKD RRRSSIHDIT SVNSGDVSTP QGPITGQTNG  240
TTAAGSSSGK SNKQPAAHPG VGVYGPTTIG QPVGGPLVSA VGTPVNLPPP AHMAYGVRPP  300
IPGQALPGVP GTYPMPHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-103MYB family protein