PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163696.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 429aa MW: 48513.5 Da PI: 4.9003

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.4	3.4e-22	116	212	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt++ v++Li+++ ++++++ + +kk++W+ vsk m ++g+++sp+qC++k+++lnkrykk++++ +++ ++ ++++ ++ d XP_019163696.1 116 KWTDSIVKLLIQVVAYVGDDVCLEGpeglkrksgciQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCAVVENPALMD 210 7************999998843224556677889********************************************5689999888888 PP trihelix 84 ql 85 ++ XP_019163696.1 211 SM 212 77 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MSSSGLGNGF LSGYSGGFLG MNRPQQPQLN GNDVGNNRIQ SSMDLKMELE NGKRIELLES 60 KGPAQKGFTM TFGKDKRVFC NNDMSDEDEP SLAEDGNGEN EDEAPGKKGS QWQRMKWTDS 120 IVKLLIQVVA YVGDDVCLEG PEGLKRKSGC IQKKGKWKTV SKIMISKGCH VSPQQCEDKF 180 NDLNKRYKKL NDILGRGTSC AVVENPALMD SMPQLSAKAK DTVKKILCSK HLFYREMCAY 240 HNGQKIPDCS DLELQIHSSS VATHCSKDNN GCPGDEAEEN DDSVDDESGD EENNTASGDA 300 VKTGTCYERR ENEQSVDNDC FGVEIDEFFQ DPTKSQWERK AWIKKRMLQL EEERVGIEEE 360 AVELEKRRFK WQRFCSEKDR ELEIERLENE RLILENKRMV LQLKLKDHEL DLPTPCVPFK 420 SGPLSLDRP

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MSSSGLGNGF LSGYSGGFLG MNRPQQPQLN GNDVGNNRIQ SSMDLKMELE NGKRIELLES  60
KGPAQKGFTM TFGKDKRVFC NNDMSDEDEP SLAEDGNGEN EDEAPGKKGS QWQRMKWTDS  120
IVKLLIQVVA YVGDDVCLEG PEGLKRKSGC IQKKGKWKTV SKIMISKGCH VSPQQCEDKF  180
NDLNKRYKKL NDILGRGTSC AVVENPALMD SMPQLSAKAK DTVKKILCSK HLFYREMCAY  240
HNGQKIPDCS DLELQIHSSS VATHCSKDNN GCPGDEAEEN DDSVDDESGD EENNTASGDA  300
VKTGTCYERR ENEQSVDNDC FGVEIDEFFQ DPTKSQWERK AWIKKRMLQL EEERVGIEEE  360
AVELEKRRFK WQRFCSEKDR ELEIERLENE RLILENKRMV LQLKLKDHEL DLPTPCVPFK  420
SGPLSLDRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-66	Trihelix family protein