PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019163643.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 561aa MW: 60633.5 Da PI: 6.562

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019163643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47	6.5e-15	177	236	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_019163643.1 177 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 236 57*****************666664477446***********************98 PP
2	AP2	47	6.2e-15	281	330	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_019163643.1 281 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 330 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MGSMNSNNWL SFPLSPSQAA AQSHHFSVGL VNDSLDTSFQ NPEWNLISTQ GSNEVPKVAD 60 FLGVGKVDSN QPDLVSYNDI QANEPDYLFS SNAGGLMPVQ TGVTVAAGPG GFELQESNAC 120 NMQSLTLSMG TSGKELATHA SPSGNATASG SAENSNTSIV EAATPRRALD TFGQRTSIYR 180 GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QVYLGGYDKE EKAARAYDLA ALKYWGTSTT 240 TNFPISNYEK EVEEMKHMTR QEFVAAIRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV 300 AGNKDLYLGT FSTEEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKAILES NTLPIGGGAA 360 KRLKEAQALE SSRKRDQEML ALNSSFHYGA ATGPMHAAAA AAAAASYPLM QPFDAQPLLT 420 LQNQDFSHYA AAQESPYSYI QTHLQLHQQQ SPSYLNPSPQ TSQYYHNHNN NPYFLHGLMN 480 MGGSSSSVMD NNGGSSSGSY SGGGYLGMAT NSNSGGNGGG GGGEELAVVK VDYDMPSGTY 540 TGWSGDSVQG SNPNIFSMWN D

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MGSMNSNNWL SFPLSPSQAA AQSHHFSVGL VNDSLDTSFQ NPEWNLISTQ GSNEVPKVAD  60
FLGVGKVDSN QPDLVSYNDI QANEPDYLFS SNAGGLMPVQ TGVTVAAGPG GFELQESNAC  120
NMQSLTLSMG TSGKELATHA SPSGNATASG SAENSNTSIV EAATPRRALD TFGQRTSIYR  180
GVTRHRWTGR YEAHLWDNSC RREGQSRKGR QVYLGGYDKE EKAARAYDLA ALKYWGTSTT  240
TNFPISNYEK EVEEMKHMTR QEFVAAIRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV  300
AGNKDLYLGT FSTEEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKAILES NTLPIGGGAA  360
KRLKEAQALE SSRKRDQEML ALNSSFHYGA ATGPMHAAAA AAAAASYPLM QPFDAQPLLT  420
LQNQDFSHYA AAQESPYSYI QTHLQLHQQQ SPSYLNPSPQ TSQYYHNHNN NPYFLHGLMN  480
MGGSSSSVMD NNGGSSSGSY SGGGYLGMAT NSNSGGNGGG GGGEELAVVK VDYDMPSGTY  540
TGWSGDSVQG SNPNIFSMWN D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20840.1	0.0	AP2 family protein